Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01564 ATGAGAAGTGGTGAAGTTGACGACGTCGTGGAGCGCGACTCCCTCGTCCACTGCTGTTACATCGCCCTCGGCCAGTTGCAGTTCGTCATCTCTGAAATCAACGACTCCGCCCCCACTCCTCTCCAAGCCGTCAAACTCCTCGCCCTCTATTTCTCCTCTCCCGACAACAAGGAATCCGCCAACTCCAGCCTCAAGGACTGGCTCGCCGATCCCGCCATCGGGAACAATGCCACGCTCAGGCTCGTCGCCGGCCTCGTCTTCCTCCACGAGAATGATTTCAACGAAGCCCTCAAATACACCAATGCCGGTGGAACCATGGAACTGCATGCGCTGAATGTTCAGATCTTCATTAAGATGCATAGGTCGGATTACGCGAAGAGGCAGCTGCGGATCATGCAGCAGATGGACGAGGATCACACTCTCACGCAGATCGCCAATGCGTGGCTTGATTTGGCTGTGGGTGGGTCGAAGATCCAGGAGGCGTATCTGATTTTCCAGGATTTGTCGGAGAGGTATCAGTCCACTAGCTTGCTCTTGAATGGGAAGGCTGTTTGCTGCATGCACATGGGCAATTTTGATGAGGCTGAGACCTTTTTGGTTGAAGCACTAAACAAGGCACACCTGATGAATGTTGATACTTTCGGAATTCTAGCTCTTGAGGAACTGCACAAGAGGTTGCTTTCACGTGGTGTAGAATTAGCTATGGTGAACCCGAGGTGGTTAGTAATTCACAAGCTTAAGCTCGCACACTTTGTAGACAAAATTGGAAAAGAGTGGGTTTTCCTCACTGTTGGAGAAGCCGTAGACGCATGTCTCTCTTCCAAAATTGCTAAAGCTTGA 840 0.5119 MRSGEVDDVVERDSLVHCCYIALGQLQFVISEINDSAPTPLQAVKLLALYFSSPDNKESANSSLKDWLADPAIGNNATLRLVAGLVFLHENDFNEALKYTNAGGTMELHALNVQIFIKMHRSDYAKRQLRIMQQMDEDHTLTQIANAWLDLAVGGSKIQEAYLIFQDLSERYQSTSLLLNGKAVCCMHMGNFDEAETFLVEALNKAHLMNVDTFGILALEELHKRLLSRGVELAMVNPRWLVIHKLKLAHFVDKIGKEWVFLTVGEAVDACLSSKIAKA 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01564 279 Gene3D Tetratricopeptide repeat domain 2 226 IPR011990 GO:0005515
Cca11g01564 279 PANTHER COATOMER SUBUNIT EPSILON 6 223 - -
Cca11g01564 279 SUPERFAMILY TPR-like 76 205 IPR011990 GO:0005515
Cca11g01564 279 ProSiteProfiles STAS domain profile. 203 271 IPR002645 -
Cca11g01564 279 Pfam STAS domain 204 267 IPR002645 -
Cca11g01564 279 Pfam Coatomer epsilon subunit 7 207 - -
Cca11g01564 279 SUPERFAMILY SpoIIaa-like 207 271 IPR036513 -
Cca11g01564 279 PANTHER COATOMER SUBUNIT EPSILON 6 223 IPR006822 GO:0005198|GO:0006890
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01564 Cca-Chr11 39053061 39056524 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01564 199 276 Inorganic Solute Cotransporters AT5G10180 56.410 1.19e-20 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01564 K17268 - gmx:547468 365.54