Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01562 ATGTACGGAGAGAGTAGCTACGAATCAGACCTGGCGCTGCTGGATTCAATTCGGCGGCACTTGCTGGGGGAGTCGGAAGCGATATTATTGGGAGCCCCGAGAAGCGTTTCGGGTCGGAGCTGCAGCTTGAGCAGCTTGAACTCGTGTTTGAGTGACAATTGGGGTGAGCTTCCACTAAAAGAGGACGATTCCGAAGACATGGTGCTCTACGGCGTCCTCCGCGACGCCCTCGACGTCGGCTGGGTCCCCTCGCTCCACGCCGCCTCGCCCGAGAGCGTCTCCTCGCCTTTTCCGCCGGTCAAGCACGAGCCCGACGTCATGCCGCCGCCCAGCATCCACGCTCCTCCGCCGCCCAAGGCTGCTCCGCCCAAGGGGAAGCACTACCGCGGCGTGCGGCAGCGCCCGTGGGGGAAGTTCGCGGCGGAGATCCGGGACCCGGCCAAAAACGGGGCTAGGGTTTGGCTGGGAACGTTCGAGACCGCCGAGGACGCGGCGCTGGCGTACGACCGCGCCGCCTACCGGATGCGCGGGTCGAGGGCGTTGCTGAATTTTCCGCTGCGGGTCAACTCCGGCGAGCCCGACCCGGTGAGAGTGACGTCGAAGCGGTCGTCTTCGCCGGAGGGTAGGGCACCGGCGAAGAGGAGGAAGGTGGTGGGGACGGGTAAGGTGCAAGTGGGAGAGTGTACACGTGGCGATCAGTTATTGGTTAGCTGA 714 0.6471 MYGESSYESDLALLDSIRRHLLGESEAILLGAPRSVSGRSCSLSSLNSCLSDNWGELPLKEDDSEDMVLYGVLRDALDVGWVPSLHAASPESVSSPFPPVKHEPDVMPPPSIHAPPPPKAAPPKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRVTSKRSSSPEGRAPAKRRKVVGTGKVQVGECTRGDQLLVS 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01562 237 Gene3D AP2/ERF domain 126 188 IPR036955 GO:0003700|GO:0006355
Cca11g01562 237 MobiDBLite consensus disorder prediction 89 130 - -
Cca11g01562 237 CDD AP2 126 185 IPR001471 GO:0003700|GO:0006355
Cca11g01562 237 Pfam AP2 domain 127 177 IPR001471 GO:0003700|GO:0006355
Cca11g01562 237 PANTHER DNA-BINDING DOMAIN 23 222 IPR044808 GO:0003700|GO:0009873
Cca11g01562 237 SMART rav1_2 127 191 IPR001471 GO:0003700|GO:0006355
Cca11g01562 237 MobiDBLite consensus disorder prediction 191 219 - -
Cca11g01562 237 MobiDBLite consensus disorder prediction 101 123 - -
Cca11g01562 237 PRINTS Ethylene responsive element binding protein signature 128 139 IPR001471 GO:0003700|GO:0006355
Cca11g01562 237 PRINTS Ethylene responsive element binding protein signature 151 167 IPR001471 GO:0003700|GO:0006355
Cca11g01562 237 ProSiteProfiles AP2/ERF domain profile. 127 185 IPR001471 GO:0003700|GO:0006355
Cca11g01562 237 PANTHER BNAANNG21280D PROTEIN 23 222 - -
Cca11g01562 237 SUPERFAMILY DNA-binding domain 127 187 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01562 Cca-Chr11 38957284 38958506 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01562 8 236 AP2-EREBP Transcription Factor Family AT4G17500 57.634 1.85e-83 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca11g01562 AP2 8.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01562 K09286 - gmx:100817097 332.798