Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01549 ATGGGTAAGCAAGGGCCTTGCCATCACTGTGGAGTTACAAGCACCCCACTTTGGCGTAATGGGCCACCTGAGAAGCCAGTACTATGCAATGCATGTGGATCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACCCCTTTACATGCTCGGGCAGAGAATGTTGATAGTGAGGATCAAAAGGTTTCCCGAGTAAAGAGCATATCATTAAATAAGAACAAAGAAGAGAAATTAGTCAAACGAAAGCAGAACTATGATAATGCTGCATCTGGAGGGTTTGTCCCTGATTATAATCAAGGATATCGAAAGGCTGTGGATGAAGATACCAGCAATAGATCAAGCTCAGGGTCAGCTGTCTCTAACTCAGAGAGCTGTGCCCAATTCGGTGGCACGGATGCTAGTGATTTGACAGGTCCTGCTCAGTCAGTGGTCTGGGATGCCACGGTGCCTTCAAAAAAGAGGACATGTGCAGGTCGTCCAAAGCCTTCTTCTGTTGAGAAGCTCACTAGAGACCTGTGTACTATTCTTCATGAACAACGGTCTTATTTTTCTGCATCTTCTGAAGATGATCTTCTTTTAGAAAGTGGTACACCAATGGTCTCTGTTGAGATAGGACATGGAAGCATTCTCATTAGGCATCCTAGCTCTATAGCTCGTGATGAAGAGTCCGAGGCTAGCTCTCTTTCAGTTGATAATAAACAATGCCTAATGAATGAGGCATATTCATGTTCTGGTACCATTCCAATGCATTGTGATCGCAGTGGCATGAACTTCTCATCTCATGGAATTGAAAAGATCAGAAACTCGGCTGGCCAAGGCATGCAACAAGAGCAACGTGATAGGGACAAGTCTCATCTTGAAAAACTTCAGGTTCCTGGAAATCATGACTCACCGTTATGCGTAATAGATTTAAATGATGTAGTGAACTATGAGGAGTTTATGAGAAACTTGACAAATGAAGAGCGGCAGCAATTACTGAAGTATCTCCCCATGGTTGATACTGCTAAATTTCCTGATAGCCTTAAAAACATGTTCAATAGCTTCCAATTCAAGGAGAACTTGACTTATTTTCAGCAACTTCTCTGGGAAGGTGTCTTTGATATATCTATGTTGGGGACAAAACCTGAAGAATGGAAGACAATGAAAAGGCTTGTGTTATCTAATCTGTCAAAGTCAAAATGGGTGGAGCACTATAACTTTCTCAAGAAATATGAAAACAAAGATGGAAAAGCTATTGATCCTGGATCTACGGGTATGGAATTAAGTAATGTTACAAATGGCAAGAGATTGCGTGAATGTGACGGCCGAAATCAAAATTTTCCAGAATTGAAGACAGCAATGAGGAGCCCCAAAAGGGTGATCATAAAGGCTAGCAGTGAGAGCAAAGAAGAAGTAGAAGAAGGCTCTAGCTTCAGTCCAAAAAGCCTATTTGCTTTACCCCATGGTGTTAGTGGCTTGGACATGCTGGATTCTTTAAACTTTGTTGGTGAGAGTTCTGAGGATTTGCTGTTAGAGGTGCCATCTAACAGTTCTTTTCCACAGGCAGAGCTCCTGCACCCAACTTTTTGCTATGGTGCTCAGGTCAGCACCACTAGTAGCTCAGTACACTCACCTAATACTCATCCTTAA 1629 0.4254 MGKQGPCHHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAENVDSEDQKVSRVKSISLNKNKEEKLVKRKQNYDNAASGGFVPDYNQGYRKAVDEDTSNRSSSGSAVSNSESCAQFGGTDASDLTGPAQSVVWDATVPSKKRTCAGRPKPSSVEKLTRDLCTILHEQRSYFSASSEDDLLLESGTPMVSVEIGHGSILIRHPSSIARDEESEASSLSVDNKQCLMNEAYSCSGTIPMHCDRSGMNFSSHGIEKIRNSAGQGMQQEQRDRDKSHLEKLQVPGNHDSPLCVIDLNDVVNYEEFMRNLTNEERQQLLKYLPMVDTAKFPDSLKNMFNSFQFKENLTYFQQLLWEGVFDISMLGTKPEEWKTMKRLVLSNLSKSKWVEHYNFLKKYENKDGKAIDPGSTGMELSNVTNGKRLRECDGRNQNFPELKTAMRSPKRVIIKASSESKEEVEEGSSFSPKSLFALPHGVSGLDMLDSLNFVGESSEDLLLEVPSNSSFPQAELLHPTFCYGAQVSTTSSSVHSPNTHP 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01549 542 Pfam Asx homology domain 280 369 IPR028020 -
Cca11g01549 542 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Cca11g01549 542 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 295 407 IPR044867 -
Cca11g01549 542 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 1 542 - -
Cca11g01549 542 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Cca11g01549 542 Gene3D - 283 392 IPR038108 -
Cca11g01549 542 MobiDBLite consensus disorder prediction 269 292 - -
Cca11g01549 542 PANTHER OSJNBB0038F03.10 PROTEIN 1 542 IPR044589 -
Cca11g01549 542 MobiDBLite consensus disorder prediction 110 133 - -
Cca11g01549 542 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Cca11g01549 542 SMART GATA_3 1 60 IPR000679 GO:0006355|GO:0043565
Cca11g01549 542 MobiDBLite consensus disorder prediction 276 290 - -
Cca11g01549 542 Gene3D - 3 86 IPR013088 GO:0006355|GO:0008270
Cca11g01549 542 CDD ZnF_GATA 6 55 IPR000679 GO:0006355|GO:0043565
Cca11g01549 542 MobiDBLite consensus disorder prediction 105 133 - -
Cca11g01549 542 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01549 Cca-Chr11 38728170 38734529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01549 1 519 C2C2-Gata Transcription Factor Family AT4G17570 50.835 9.10e-149 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Cca11g01549 ASXH 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01549 - - gmx:100799745 942.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01660 06 31863316 31869944 Cca11g01549 11 38728170 38734529 PCT