Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01547 ATGGAATTGAGTTTTAAGCATCAAGTTGGACTGGTTTGTGTGATATTGTTGTTCCCTGCACTGTGCAGCTGCCACGAATATGTTACGAACTCGAGAGCAAGCTATTATAACACACCTGATGGCCTTGGAAATCCAAGGGGAGCTTGTGGGTTTGGAGAATATGGAAGGACAATGAATAATGGGAGTGTGGCAGCAGTATCTGGTTTATGGAGGAATGGGGCTGGGTGTGGTGCATGCTATCAGGTATGGTGCAAGATACCAGAATACTGCAACGGAAAAGGTGTACACGTGGTGGCAACAGACTACGGTGCAGGAGACAACACGGACTTCATTATGAGCAAACGTGGCTTCTATGGTTTAGGACGTAACGCGGGTGCTTCTAAAGAGCTTTTCAAACGCGGAGTTGTTGATATTGCATTCAAAAGGGTTCCCTGCAGATACACTGATAGCATCAAGCTCCACGTTCAGGAGAGCAGCAAAAACCCTGGCTACTTTGCTGTTCTGATTCTCAACGCAGATGACATCACTGCTGTTCAGATGTGGCTGAAAAGGCAACAACGATGGGAACCCCTTCGCAGGGTGTATGGAGCAGTGTTTGACTTTGCTAACCCACCAACTGGTGAAATCTTGATGAGGTTTCAAGTGGGCTATAAGTATTGGCTGCTACCTAAGATCGCTATCCCTGCCAATTGGAAGCCTGGAGCTACTTATGACACCAAACTTCACCCTTATTAG 735 0.468 MELSFKHQVGLVCVILLFPALCSCHEYVTNSRASYYNTPDGLGNPRGACGFGEYGRTMNNGSVAAVSGLWRNGAGCGACYQVWCKIPEYCNGKGVHVVATDYGAGDNTDFIMSKRGFYGLGRNAGASKELFKRGVVDIAFKRVPCRYTDSIKLHVQESSKNPGYFAVLILNADDITAVQMWLKRQQRWEPLRRVYGAVFDFANPPTGEILMRFQVGYKYWLLPKIAIPANWKPGATYDTKLHPY 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01547 244 Pfam Expansin C-terminal domain 151 228 IPR007117 -
Cca11g01547 244 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Cca11g01547 244 Gene3D - 146 240 IPR036749 -
Cca11g01547 244 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 241 - -
Cca11g01547 244 PANTHER EXPANSIN-B3 4 241 - -
Cca11g01547 244 Pfam Lytic transglycolase 67 138 IPR009009 -
Cca11g01547 244 SUPERFAMILY Barwin-like endoglucanases 14 148 IPR036908 -
Cca11g01547 244 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 239 IPR007117 -
Cca11g01547 244 Gene3D - 21 145 IPR036908 -
Cca11g01547 244 SUPERFAMILY PHL pollen allergen 150 238 IPR036749 -
Cca11g01547 244 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Cca11g01547 244 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Cca11g01547 244 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Cca11g01547 244 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01547 Cca-Chr11 38717962 38719227 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01547 11 241 Expansin Gene Family AT4G17030 47.699 1.50e-73 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01547 - - gmx:100776830 405.216