Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01546 ATGGAACTCGGTTTCAGGCACCAACTTGGCCTTGTTTGTGTCATATTCCTCTTCCCTGCACTGTGTAACTGCAAGGAACATTTCACCAAATCCAGAGCAACCTATTATGGTACCCATGATGGCTATGGAGCTCCAAGTGGAGCTTGTGGCTATGGCGAATATGGAAGGACAGTGTATAATGGCAGTGTCGCAGATGTGTCTGGACTATGGAGAAATGGAGCTGGCTGTGGTGCATGTTATCAGGTAAGGTGCAAAATACCAAGTTTGTGCGATGTGAATGGAGCACACCTGGTGGTAACAGACAATGGTGCCGGTGACAATACAGACTTCATTATGAGCCCACGCGCCTTCTCAAAATTGGGACGTAACAACGCTGCATCTGCAAACCTTAAGAAATACGGTACAGTGGATATTGAATACAAAAGGGTTCCTTGTACATACACCAGCAATGTCTTGTTTCATATCAAGGAAGCTAGCACAAACCCTGGTTACTTCGCTGTCGTGATTCTCAATGTAAATGGAATACACGACATCACTGCTGTTGAAATGTGGCAGAAAAGGCAACAACGATGGGAAGCCTTGCGCAGGTCCTATGGGGCAGTGTTCGACTATGCTAACCCACCAAGTGGTGAAATCCAGTTGAGGTTTCAATTGGGCTATAAATATTGGGTGCGTTCCAAGATCCATATCCCTGCTAATTGGAAGCCTGGAGCTACTTATGACACCAAGGTTAAGCTTCATTAG 744 0.4583 MELGFRHQLGLVCVIFLFPALCNCKEHFTKSRATYYGTHDGYGAPSGACGYGEYGRTVYNGSVADVSGLWRNGAGCGACYQVRCKIPSLCDVNGAHLVVTDNGAGDNTDFIMSPRAFSKLGRNNAASANLKKYGTVDIEYKRVPCTYTSNVLFHIKEASTNPGYFAVVILNVNGIHDITAVEMWQKRQQRWEALRRSYGAVFDYANPPSGEIQLRFQLGYKYWVRSKIHIPANWKPGATYDTKVKLH 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01546 247 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 246 - -
Cca11g01546 247 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 163 242 IPR007117 -
Cca11g01546 247 Gene3D - 146 243 IPR036749 -
Cca11g01546 247 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Cca11g01546 247 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Cca11g01546 247 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Cca11g01546 247 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Cca11g01546 247 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Cca11g01546 247 SUPERFAMILY Barwin-like endoglucanases 13 149 IPR036908 -
Cca11g01546 247 Gene3D - 20 145 IPR036908 -
Cca11g01546 247 Pfam Expansin C-terminal domain 152 227 IPR007117 -
Cca11g01546 247 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Cca11g01546 247 Pfam Lytic transglycolase 69 129 IPR009009 -
Cca11g01546 247 SUPERFAMILY PHL pollen allergen 150 241 IPR036749 -
Cca11g01546 247 PANTHER EXPANSIN-B3 4 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01546 Cca-Chr11 38711948 38714060 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01546 9 246 Expansin Gene Family AT4G17030 48.148 1.81e-77 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01546 - - gmx:100813628 389.423