Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01543 ATGGAGCTTAGTTTTAAGCACCAACTTGGCCTTGTTTGTGTCCTATTGCTCTTTCCTTCACTTTGTTACTGCGAATATACTAAATCCAGAGCAACCTTTTATAGTACATCTGATGGCTATGGGACTCCAACCGGAGCTTGTGGGTTTGGTGAATACGGAAGGAAGATGAATTGGTACGATGGAAAGGTCTCAGGGGTGTCTGAGCTATGGAGGAACGGAGCTGGCTGTGGTACATGCTATTGGGTAAGGTGCCAAATAGAAAATGTGTGCGACGTGAATGGAGTATACTTGGCGGTAACAGACCAGGGTTATGGAGACAGAACAGACTTCGTGATGAGCGAACGCGCCTTCACAAAAATGGGACTTAACGAGAATGCAGCTCAAGAGCTTAAGAAATACGGCACTGTGGACATTGAATACGAAAGGGTCCCTTGTACGTACACCGGCAATGTTGTCTTTCATATTCAGGAAACTAGCAGCAACCCTGGTTACTTTGCTTTGGTCATTCTCTACGTAAATGGAATTCACGACATCACTAATGTTGAGATGTGGCAGCCGGAGTCTGGAGAATGGAAGGCACTAAACAGGAACCATGGGGCAGTGTTTGATTTTCCTAACCCACCAAGTGGTGAAATTCGGTTGAGGTTTAAGGTGAGTGGCATGGCTGAATGGGTGGACCCCAAGATTGTTATACCTAGTAACTGGGGGCCCGGAGCTTCTTATGTCACCCAGGTTCAGCTCAAATAG 747 0.4645 MELSFKHQLGLVCVLLLFPSLCYCEYTKSRATFYSTSDGYGTPTGACGFGEYGRKMNWYDGKVSGVSELWRNGAGCGTCYWVRCQIENVCDVNGVYLAVTDQGYGDRTDFVMSERAFTKMGLNENAAQELKKYGTVDIEYERVPCTYTGNVVFHIQETSSNPGYFALVILYVNGIHDITNVEMWQPESGEWKALNRNHGAVFDFPNPPSGEIRLRFKVSGMAEWVDPKIVIPSNWGPGASYVTQVQLK 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01543 248 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Cca11g01543 248 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Cca11g01543 248 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Cca11g01543 248 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Cca11g01543 248 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Cca11g01543 248 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Cca11g01543 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 163 243 IPR007117 -
Cca11g01543 248 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 248 - -
Cca11g01543 248 Pfam Lytic transglycolase 64 139 IPR009009 -
Cca11g01543 248 Gene3D - 20 146 IPR036908 -
Cca11g01543 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 150 IPR007112 -
Cca11g01543 248 PANTHER EXPANSIN-B3 4 248 - -
Cca11g01543 248 SUPERFAMILY PHL pollen allergen 150 242 IPR036749 -
Cca11g01543 248 SUPERFAMILY Barwin-like endoglucanases 13 150 IPR036908 -
Cca11g01543 248 Pfam Expansin C-terminal domain 151 232 IPR007117 -
Cca11g01543 248 Gene3D - 149 247 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01543 Cca-Chr11 38702352 38704735 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01543 1 247 Expansin Gene Family AT4G17030 44.444 2.39e-71 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01543 - - gmx:100777265 432.95