Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01542 ATGGAAATTAGTTTTAAGCACCAACTTAGCCTTGCTTGTGTCATACTACTTTTGCCTGCACTGTGTAGCTCACAGGACTCCTTCACGGACTCCAGAGCAACGTATTATGGTAGCCCTGATTGCTATGGGAATCCAAGGGGAGCTTGTGGCTTTGGCGAATATGGAAGGACGGTGAATGATGGAAGTGTGGCAGGTGTGTCTAGGCTATGGAGGAATGGAAGTGGCTGTGGTGCATGCTACCAGGCAAGGTGCAAAATACCACAATATTGTGATGAAAATGGAGCATACGTGGTGGTAACAGATTATGGTGAGGGAGACAGAACAGACTTCATCATGAGTCCACGCGCATACTCAAGATTGGGACGCAACGCAGATGCATCAGCAGAGTTGTTCAAATACGGTGTAGTTGATATTCAATACAGAAGGGTACCCTGCAGATACACTGGCTATAACGTCGTGTATAAGGTCCATGAACACAGCAGAAACCCTGACTACTTTGCTGTCGTCATTCTCTATGTAGATGGAACATACGACGTCAATGCTGTCCAATTGTTTCAGCAAGACTGCCAAGAATGGAAGCCAATGCGTAGGGCCTTTGGGGCAGTGTTTGACTATAGCAACCCTCCAAGTGGAGAACTGTACTTGAGGTTCCAAGTGAGTGGCAATGCAGGGCTTTATTGGGTGCAGTCCAACAATGCTGTCTCTAGTGATTGGAAGGCTGGAGCAACATATGACACCATGGTTCAGCTTAATTAG 756 0.4683 MEISFKHQLSLACVILLLPALCSSQDSFTDSRATYYGSPDCYGNPRGACGFGEYGRTVNDGSVAGVSRLWRNGSGCGACYQARCKIPQYCDENGAYVVVTDYGEGDRTDFIMSPRAYSRLGRNADASAELFKYGVVDIQYRRVPCRYTGYNVVYKVHEHSRNPDYFAVVILYVDGTYDVNAVQLFQQDCQEWKPMRRAFGAVFDYSNPPSGELYLRFQVSGNAGLYWVQSNNAVSSDWKAGATYDTMVQLN 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01542 251 SUPERFAMILY PHL pollen allergen 151 245 IPR036749 -
Cca11g01542 251 Pfam Expansin C-terminal domain 154 234 IPR007117 -
Cca11g01542 251 Pfam Lytic transglycolase 63 140 IPR009009 -
Cca11g01542 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Cca11g01542 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 246 IPR007117 -
Cca11g01542 251 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 251 - -
Cca11g01542 251 SUPERFAMILY Barwin-like endoglucanases 14 149 IPR036908 -
Cca11g01542 251 Gene3D - 19 145 IPR036908 -
Cca11g01542 251 Gene3D - 146 247 IPR036749 -
Cca11g01542 251 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Cca11g01542 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Cca11g01542 251 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Cca11g01542 251 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Cca11g01542 251 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Cca11g01542 251 PANTHER EXPANSIN-B3 4 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01542 Cca-Chr11 38689153 38690920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01542 1 250 Expansin Gene Family AT4G17030 58.964 9.27e-111 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01542 - - gmx:100779487 508.449