Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01533 ATGAAACCTGAGGAGATCACAACCCTGGATGAAGATCAAGATGGATGGCAGACTGTTGGCAAATCTTCAAGGCATAAACACAAGGTTCCAAAAGAAAACTGGAACAGCTATAAACGACCTCCTGATGAGCAAGAATACTCTAATGAGGTAGAATTTCGTGCTGGTGTGGAACCCTCGGAAGATGAACTTGCTGATCTTTCAAGAGCTTGTGAAAAACTGTGGCATCTTGATTCAAATCGTTTGACACCTAACAAAGACTACGAAATTGACTGTGGTGAAGGCAAAAAGGCTTACCAAAAGGAAGATATGGCACAGGGGAGCTTGTTTACTTGGGTTAATGATGATGTATTCAGAAAGCCTACTTTTGCTCGTTTTCTTTCTCTTTTAGATAATTACAATCCACATCAAGGATGTAAGGAAGTAGTCACATCTGAAGAGAGACAAGAACAAGCTTCTTTCATAGAAGAAATCAGTAGAACAGCCCCAATTAAATATCTTCACAGGTATCTTGCTTCCAAAGGAATTGTATCAGAGAGTTACCAAGAATTCAAAAGAATGATGACCAATCTGTGGTTTGACCTTTATGGCCGTGGTGGCACTTCTGGTTCCTCTTCTGCTTTTGAACATGTTTTTGTTGGAGAAATCAAACAAGCTGGAGAAGTTTCTGGCTTTCATAACTGGCTGCAGTTTTACCTTGAAGAAGAAAAGGGGAGAATTGATTATCAAGGCTATATTTTACCCCGTCGACGGGGAGAATTTCCTGACTCTGAAACCCAGCTTCTGACTATTCAGTTTGAATGGAATGGTGTTCTGAAATCTGTTTCAAGCACTTTGGTTGGAGTGAGTCCTGAATTTGAAATTGCGTTGTACACCCTGTGTTTCTATGTTGGCGGGGAGGATAACCACATTCAGCTTGGCCCTTATGAACTGGATGAAGATCAAGATGGATGGCAGACTGTTGGCAAATCTTCAAGGCATAAACACAAGGTTCCAAAAGAAAACTGGAACAGCTATAAACGACCTCCTGATGAGCAAGAATACTCTAATGAGGTAGAATTTCGTGCTGGTGTGGAACCCTCGGAAGATGAACTTGCTGATCTTTCAAGAGCTTGTGAAAAACTGTGGCATCTTGATTCAAATCGTTTGACACCTAACAAAGACTACGAAATTGACTGTGGTGAAGGCAAAAAGGCTTACCAAAAGGAAGATATGGCACAGGGGAGCTTGTTTACTTGGGTTAATGATGATGTATTCAGAAAGCCTACTTTTGCTCGTTTTCTTTCTCTTTTAGATAATTACAATCCACATCAAGGATGTAAGGAAGTAGTCACATCTGAAGAGAGACAAGAACAAGCTTCTTTCATAGAAGAAATCAGTAGAACAGCCCCAATTAAATATCTTCACAGGTATCTTGCTTCCAAAGGAATTGTATCAGAGAGTTACCAAGAATTCAAAAGAATGATGACCAATCTGTGGTTTGACCTTTATGGCCGTGGTGGCACTTCTGGTTCCTCTTCTGCTTTTGAACATGTTTTTGTTGGAGAAATCAAACAAGCTGGAGAAGTTTCTGGCTTTCATAACTGGCTGCAGGAGGAGAAACTAGGTTTTGAGCTTGGTTCTGGCAATTTTGGTGTGGCCAGGCTCGCCAAAGACAAGAAAACCGGACACCTTGTTGCGGTCAAATACATAGAGAGGGGTAAAAAGATTGATGAGAATGTTCAGAGGGAGATAATTAACCACCGATCTTTAAGGCATCCAAATATAATCAGGTTCAAAGAGGTCTTGTTGACCCCTACACATTTAGCTATAGTATTGGAGTATGCCTCAGGTGGTGAACTTTTTGAGAGGATATGTACTGCTGGTCGATTTAGTGAAGATGAGGCAAGATATTTCTTCCAGCAGCTAATATCTGGGGTTAGCTACTGTCATTCAATGGAAATTTGTCATAGAGATCTGAAATTGGAAAACACTCTCTTGGATGGAAATCCTTCTCCTCGACTTAAAATTTGTGACTTCGGTTACTCCAAGTCTGCTCTACTGCACTCTCAACCTAAATCAACAGTGGGAACTCCTGCATACATTGCTCCGGAGGTTCTGTCACGGAAGGAGTATGATGGAAAGATTTCAGATGTTTGGTCCTGTGGTGTGACTCTTTATGTTATGCTAGTTGGTGCATACCCATTTGAAGATCCAGAAGATCCTAGAAATTTCAGAAAGACTATTGGGAGAATAATAGGTGTTCAGTACTCCATACCGGACTATGTTCGTGTTTCTTCTGAGTGTAGGAATCTTCTCTCTCGCATCTTTGTTGCCGATCCTGCAAAGAGGATCACCATCCCAGAGATAAAACAGAACCCTTGGTTTCTGAAGAATTTGCCTAAAGAGATCATTGAAGCTGAAAGAAAAGGTTTCGAGGAAACAAAGAAAGACCAACCAAGCCAGAGAGTTGAAGAAATCATGAGGATCATACAAGAGGCAATGATACCAGGAAAAGCATCCAAAGCTGGTGATGGTGGACAAGCTGGCACTGGATCATTAGATGTTGAAGATGATGAGGAAATTGATGTTAGTGGTGACTATGAACCTGTGTGA 2592 0.4113 MKPEEITTLDEDQDGWQTVGKSSRHKHKVPKENWNSYKRPPDEQEYSNEVEFRAGVEPSEDELADLSRACEKLWHLDSNRLTPNKDYEIDCGEGKKAYQKEDMAQGSLFTWVNDDVFRKPTFARFLSLLDNYNPHQGCKEVVTSEERQEQASFIEEISRTAPIKYLHRYLASKGIVSESYQEFKRMMTNLWFDLYGRGGTSGSSSAFEHVFVGEIKQAGEVSGFHNWLQFYLEEEKGRIDYQGYILPRRRGEFPDSETQLLTIQFEWNGVLKSVSSTLVGVSPEFEIALYTLCFYVGGEDNHIQLGPYELDEDQDGWQTVGKSSRHKHKVPKENWNSYKRPPDEQEYSNEVEFRAGVEPSEDELADLSRACEKLWHLDSNRLTPNKDYEIDCGEGKKAYQKEDMAQGSLFTWVNDDVFRKPTFARFLSLLDNYNPHQGCKEVVTSEERQEQASFIEEISRTAPIKYLHRYLASKGIVSESYQEFKRMMTNLWFDLYGRGGTSGSSSAFEHVFVGEIKQAGEVSGFHNWLQEEKLGFELGSGNFGVARLAKDKKTGHLVAVKYIERGKKIDENVQREIINHRSLRHPNIIRFKEVLLTPTHLAIVLEYASGGELFERICTAGRFSEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGNPSPRLKICDFGYSKSALLHSQPKSTVGTPAYIAPEVLSRKEYDGKISDVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIGRIIGVQYSIPDYVRVSSECRNLLSRIFVADPAKRITIPEIKQNPWFLKNLPKEIIEAERKGFEETKKDQPSQRVEEIMRIIQEAMIPGKASKAGDGGQAGTGSLDVEDDEEIDVSGDYEPV 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01533 863 Pfam Protein kinase domain 537 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01533 863 MobiDBLite consensus disorder prediction 1 47 - -
Cca11g01533 863 ProSiteProfiles Eukaryotic uridylate-specific endoribonuclease (EndoU) domain profile. 363 530 IPR018998 GO:0004521
Cca11g01533 863 SUPERFAMILY Protein kinase-like (PK-like) 537 795 IPR011009 -
Cca11g01533 863 CDD STKc_SnRK2 537 787 - -
Cca11g01533 863 ProSitePatterns Protein kinases ATP-binding region signature. 538 561 IPR017441 GO:0005524
Cca11g01533 863 ProSiteProfiles Protein kinase domain profile. 532 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01533 863 MobiDBLite consensus disorder prediction 829 863 - -
Cca11g01533 863 SUPERFAMILY EndoU-like 64 309 IPR037227 -
Cca11g01533 863 ProSiteProfiles Eukaryotic uridylate-specific endoribonuclease (EndoU) domain profile. 62 329 IPR018998 GO:0004521
Cca11g01533 863 SMART serkin_6 532 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01533 863 Gene3D Phosphorylase Kinase; domain 1 525 607 - -
Cca11g01533 863 PANTHER PLACENTAL PROTEIN 11-RELATED 18 311 IPR039787 GO:0004521
Cca11g01533 863 PANTHER PLACENTAL PROTEIN 11-RELATED 322 530 IPR039787 GO:0004521
Cca11g01533 863 SUPERFAMILY EndoU-like 365 530 IPR037227 -
Cca11g01533 863 CDD XendoU 363 535 IPR018998 GO:0004521
Cca11g01533 863 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672|GO:0006468
Cca11g01533 863 Pfam Endoribonuclease XendoU 65 310 IPR018998 GO:0004521
Cca11g01533 863 Pfam Endoribonuclease XendoU 366 530 IPR018998 GO:0004521
Cca11g01533 863 PANTHER - 322 530 - -
Cca11g01533 863 PANTHER - 18 311 - -
Cca11g01533 863 Gene3D Transferase(Phosphotransferase) domain 1 608 795 - -
Cca11g01533 863 MobiDBLite consensus disorder prediction 29 47 - -
Cca11g01533 863 MobiDBLite consensus disorder prediction 846 863 - -
Cca11g01533 863 MobiDBLite consensus disorder prediction 316 343 - -
Cca11g01533 863 CDD XendoU 62 311 IPR018998 GO:0004521
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01533 Cca-Chr11 38485741 38501943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01533 534 807 CBL-interacting serine-threonine protein kinases AT4G24400 42.553 1.20e-64 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Cca11g01533 Pkinase 2.4e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01533 K14498 - gmx:100782714 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01533 11 38485741 38501943 Cca11g01533 11 38485741 38501943 ECH
Cca06g01644 06 31672113 31675148 Cca11g01533 11 38485741 38501943 PCT