Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01525 ATGCTTCGCACGCCAACACGTAGCGCCTCTCCATTCTTCCCGTTCTTCACCATATTTCCTTTCCGTTCTCCATGCTTCGCACGCCATTGGTTGGGAGCACTCCGATTTCCTTCCCGTTCTTCGCTCCTTTCCTACGTTCGAAGACAGGAGCAGAGTATGACAAGGAGTGCAAAATTTGTACAAGGCCTTCTGGATCTTGAATATGGACTACCAGTTCAATGCCTCCAACCCCTGTGTGCAGCGCCTTCCATCCAGAAAAAAAAAATGACTAAGAGAACAAAGAAGGCTGGTATTGTTGGAAAATACGGTACCCGTTATGGTGCCAGTCTGCGGAAGCAGATTAAGAAGATGGAAGTTAGTCAACACAGCAAATTTTTCTGTGAATTTTGTGGAAAGTATGCTGTGAAGAGGAAGGCTGTGGGAATATGGGGATGCAAGGACTGTGGTAAAGTGAAAGCTGGTGGTGCTTACACTTTGAATACTGCAAGTGCTGTGACTGTGCGGAGCACCATCAGGAGGTTGAGGGAACAAACTGAGAGCTAA 543 0.4715 MLRTPTRSASPFFPFFTIFPFRSPCFARHWLGALRFPSRSSLLSYVRRQEQSMTRSAKFVQGLLDLEYGLPVQCLQPLCAAPSIQKKKMTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01525 180 SUPERFAMILY Zn-binding ribosomal proteins 98 170 IPR011332 GO:0006412
Cca11g01525 180 PANTHER ZGC:171772 83 180 - -
Cca11g01525 180 TIGRFAM eL43_euk_arch: ribosomal protein eL43 89 179 IPR002674 GO:0003735|GO:0005840|GO:0006412
Cca11g01525 180 Hamap 50S ribosomal protein L37Ae [rpl37ae]. 92 160 IPR002674 GO:0003735|GO:0005840|GO:0006412
Cca11g01525 180 Pfam Ribosomal L37ae protein family 92 176 IPR002674 GO:0003735|GO:0005840|GO:0006412
Cca11g01525 180 PANTHER 60S RIBOSOMAL PROTEIN L37A-2 83 180 - -
Cca11g01525 180 Gene3D - 89 180 IPR011331 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01525 Cca-Chr11 38380264 38385528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01525 89 180 Cytoplasmic Ribosomal Protein Gene Family AT3G10950 93.478 1.37e-59 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01525 K02921 - twl:119982996 190.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01525 11 38380264 38385528 Cca11g01525 11 38380264 38385528 ECH