Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01522 ATGAAGTGCTTCTTCTTCAAAGACAAGTCCAAGTCCGCCCCCGAATTGCACAAGAAGAAGAGCCCCGCCGTCAACCGCGCCGCCAACTCCACCGGCTCCGTCTCCTCCCCCAAGAGCGTCAAAGACTTGTACAGAGAGAAAGAGCACAGCTTCACTGTTTTCACCTTCCAAGACCTCAGAGATGCCACCAACGGCTTCAATAGAATGTTCAAGCTCGGAGAAGGGGGTTTCGGAAGTGTCTACAAAGGATCCATCATGCTTCCTAATGCTCAAGGTCACCCAATTCCAGTTGCTATTAAAAGACTCAACACCCGTGGCTTCCAGGGTCATAAAGAATGGCTTGCTGAAGTTCAATTTCTTGGCATTGTCGATCACCCAAATTTGGTTAAGCTTTTGGGATACTGCTCCGTGGATGGAGAAAGAGGAATCCAACGGTTGTTGGTGTATGAGTTCATGCCAAACAGGAGCTTGGAGGATCACCTTTTCAATAAATCATTACCAACGCTGCCTTGGAAAACTAGATTGGAGATCATGCTTGGTGCTGCTCAAGGATTAGCTTATCTGCACGAGGGACTGGAGATTCAGGTCATCTATCGAGATTTCAAATCTTCAAACGTTCTATTGGATCAGGATTTCCATCCAAAGCTCTCCGATTTTGGTCTTGCTAGAGAAGGACCACAGGGTGATCAGACTCATGTATCCACTGCGGTAGTTGGGACACATGGATATGCTGCCCCAGAGTATATTGAAACGGGTCATCTGAAAGTTCAGAGTGACATGTGGAGTTTTGGTGTCGTACTGTATGAGATCCTCACAGGAAGAAGGACATTGGAAAGAAACCGCCCGACAGCAGAACAAAAGCTTTTAGATTGGGTCAAACACTACCCTGCAGACAGCAGCAGATTCGTCATCATAATGGATCCACGTCTGAGGAATCAGTATTCTCTTCCAGCAGCTCGCAAAATAGCCAAGTTGGCTGATAGCTGCTTGAAGAAGAATCCAGAAGATAGACCCTCCATGAGTCAGATAGTGGAAAGCTTGAAGCAAGCATTGCAATATTCTGAAACGCCAAACACTTCTCGTGACATTGCTGAATCCTCCTCATCCAGGTCTAAATTGGTCCGAAAAAGTAAATAG 1137 0.4653 MKCFFFKDKSKSAPELHKKKSPAVNRAANSTGSVSSPKSVKDLYREKEHSFTVFTFQDLRDATNGFNRMFKLGEGGFGSVYKGSIMLPNAQGHPIPVAIKRLNTRGFQGHKEWLAEVQFLGIVDHPNLVKLLGYCSVDGERGIQRLLVYEFMPNRSLEDHLFNKSLPTLPWKTRLEIMLGAAQGLAYLHEGLEIQVIYRDFKSSNVLLDQDFHPKLSDFGLAREGPQGDQTHVSTAVVGTHGYAAPEYIETGHLKVQSDMWSFGVVLYEILTGRRTLERNRPTAEQKLLDWVKHYPADSSRFVIIMDPRLRNQYSLPAARKIAKLADSCLKKNPEDRPSMSQIVESLKQALQYSETPNTSRDIAESSSSRSKLVRKSK 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01522 378 CDD STKc_IRAK 72 349 - -
Cca11g01522 378 Pfam Protein tyrosine and serine/threonine kinase 71 347 IPR001245 GO:0004672|GO:0006468
Cca11g01522 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Cca11g01522 378 PANTHER OS01G0588500 PROTEIN-RELATED 17 371 - -
Cca11g01522 378 Gene3D Transferase(Phosphotransferase) domain 1 152 372 - -
Cca11g01522 378 MobiDBLite consensus disorder prediction 24 38 - -
Cca11g01522 378 Gene3D Phosphorylase Kinase; domain 1 46 151 - -
Cca11g01522 378 MobiDBLite consensus disorder prediction 351 367 - -
Cca11g01522 378 MobiDBLite consensus disorder prediction 16 39 - -
Cca11g01522 378 MobiDBLite consensus disorder prediction 351 378 - -
Cca11g01522 378 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL20-RELATED 17 371 - -
Cca11g01522 378 ProSitePatterns Protein kinases ATP-binding region signature. 72 100 IPR017441 GO:0005524
Cca11g01522 378 ProSiteProfiles Protein kinase domain profile. 66 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01522 378 SUPERFAMILY Protein kinase-like (PK-like) 48 347 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01522 Cca-Chr11 38336333 38338891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01522 3 347 Glycoside Hydrolase AT3G07070 41.899 2.02e-89 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca11g01522 PK_Tyr_Ser-Thr 5.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01522 - K00924 gmx:100305403 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01522 11 38336333 38338891 Cca11g01522 11 38336333 38338891 ECH
Cca06g01639 06 31635265 31638566 Cca11g01522 11 38336333 38338891 PCT