Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01510 ATGGCTCTCTCTCTCTTGTGTCCTCTTCTTGCCACCTTTCTTTTCATGCAAACTCTGGCAGATACTTCATGTACTACCGATTGTTTTGTTCAATCTCGTGCAGCCTATTATCCAAACTCTGAACAAAATGGCACAGATGTTGGTGCATGTGGATTTGGTTCCTTTGGTGCCACTGTTAATGGTGGAGATGTATCAGCTGCATCTAATCTTTATCGTAATGGTGTTGGTTGTGGAGCCTGTTACCAGGTTAGATGTACCAATAGTGCTTATTGCTCAGGCAACGGAGTCACTGTAGTTTTAACTGACCAAGGCTCAAGTGGTAACACTGACTTCATTCTTAGCCAACGAGCTTTTGGTGGGATGGCTGTGAACACTGATGCGGCTGCTTCTCTATTGGCTCTTGGCGTGGTTGATGTTGAATATAGACGTGTTTCATGCAGCTACCCAAACAAAAACCTTACAGTTAAGATAGATGAGAGCAGCAACAACCCTCACTATTTGGCATTTGTCATATGGTTTCAACAAGGAAGTAGAGACATAACTGCTGTGCAGCTTTGTGAGACTCAGAACTTTGTCTGCAAGTTACTGGATCGGAGTCATGGGGCAGTTTGGACCACTGGCGCTCCACCAAGTGGACCTTTGTCTTTAAGGATGTTGTTCAGTGCTGAAGAAGAGGGAGACGAAACATGGGTCGCTCCTGTTAATAACATTCCACAAGACTGGAAGGCTGGACAAACATATGACTTGGGGGTACAAGTGGACCAATAG 768 0.4492 MALSLLCPLLATFLFMQTLADTSCTTDCFVQSRAAYYPNSEQNGTDVGACGFGSFGATVNGGDVSAASNLYRNGVGCGACYQVRCTNSAYCSGNGVTVVLTDQGSSGNTDFILSQRAFGGMAVNTDAAASLLALGVVDVEYRRVSCSYPNKNLTVKIDESSNNPHYLAFVIWFQQGSRDITAVQLCETQNFVCKLLDRSHGAVWTTGAPPSGPLSLRMLFSAEEEGDETWVAPVNNIPQDWKAGQTYDLGVQVDQ 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01510 255 Gene3D - 15 147 IPR036908 -
Cca11g01510 255 Pfam Lytic transglycolase 67 141 IPR009009 -
Cca11g01510 255 PANTHER POLLEN ALLERGEN ORY S 1, PUTATIVE-RELATED 4 254 - -
Cca11g01510 255 SUPERFAMILY PHL pollen allergen 151 248 IPR036749 -
Cca11g01510 255 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Cca11g01510 255 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Cca11g01510 255 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Cca11g01510 255 Pfam Expansin C-terminal domain 154 231 IPR007117 -
Cca11g01510 255 SUPERFAMILY Barwin-like endoglucanases 18 150 IPR036908 -
Cca11g01510 255 Gene3D - 148 253 IPR036749 -
Cca11g01510 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Cca11g01510 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 249 IPR007117 -
Cca11g01510 255 PANTHER EXPANSIN-B3 4 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01510 Cca-Chr11 38115514 38117878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01510 9 248 Expansin Gene Family AT4G17030 43.568 5.27e-60 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01510 - - gmx:100812555 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01620 06 31340761 31342575 Cca11g01510 11 38115514 38117878 PCT