Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01502 ATGGTTTGCACTGCCAATGATTTACAAGAGTGGAAAGATTTTCCCAAAGGACTCAAGGTTCTTCTCCTTGAGGGAGACAGCGTTTCTGCTGCTGAGGTAAGGGCAAAGCTTGAGGCCATGGACTATAATGTTTCCACATTCTGTGATGAGAATGAAGCCTTGTCAGCGATCTCAAGTAGATCTGAAAGCTTCCACATTGCCATAGTGGAGGTGAGTTCAAGCAGTAATCAGGGAGGTTTCAAATTTCTTGAGAATGCCAAGGACTTGCCAACCATTATGACTTCAAACAATCATTGCTTGAACACCATGATGAAGTGCATAGCGCTTGGTGCAGTTGAGTTCCTCAGCAAGCCACTCTCTGAGGATAAGCTCAGAAATATCTGGCAGCATGTGGTTCACAAGGCATTCAGCGCTGGGGCAAGCGTACTGTGTGAATCACTTAAACCAGTCAAGGAATCTGTTGTGTCCATGTTGCAGCTCAAAACAGACAATGAACAACATGAAAGTGGAGTATCCATTGATATAGAGAAAGTATACAGGTTTACTGATAATGATCATGAGCAGTCTCCTGGAAATGATAAATATCCAGCTCCTTCAACCCCACAATTAAGGCAAGGAACAAGATTGTTGGACGATGGTGATTGCCAAGAGCAGACTAATTGCTCAACAGAGAAAGAAAGTGGGGAAAATGATGGAGAATCTAAATCTGTCGAAACTACATGTGGAAATTTGGAGAGCAATGAACAATTTAGGCAAGGGACAAGATTGTTGGAAGATGGTGATTGCCAAGAGCAGATTAATTGCTCAGCAGAGAAAGAATGTGGGGAACATGATGGAGAATCTAAATCTGTCGAAACTACATGTGGTAATTTGAATGCTGAAACTGAAAGTACTCCTCAGCAAAGGAATTCTGAAACTACTTTGGCTAAGGAGGAAGTGGATTTAGTTGATGCTACCAAGGGTGAGACTGTTGCTTCTCTGCATGCACAAAAAAGAAAAGTTCTAAGCAACACTGATAGAAATATCAAATCTCCAAATAAAGCAGGTGTTCATAGTGATGCATGTGAGATCAGAACAAATCGGAAAAAGATGAAAGTAGACTGGACGCCTGAACTGCACAAAAAATTTGTGAAGGCAGTGGAGCAACTAGGCATTGATCAAGCCATTCCTTCTAGAATATTGGAGTTAATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAGTATAGAATGCATAAGAGACAAATCTTGCCCAAGGAAGAAGATAGGAAATGGTTGAATCCAAGAGAAAAGAGCTATTGTGTTCAAAGACCAATTATGGCATTTCCTCCATATCATTCAAATCACACCCTTCCTTTGGCTCCTGTATATCCTATGTGGGGACAATCTGGAAATCAAACGGCTGGCATGCAGATCTGGGGCTCTCCTGGTTATCCCATGTGGCAGCCTACTGCTGAAAGTTGGCACTGGAAACCATTTCCAGGGGTGCATGCAGATGCATGGGGCTGCCCAGTGTTACCAGTACCACCTCCTCAAGCTCCTTGTTTTCCCTACTCTCAGAATATGCCTGCGTTGCTCAATGCTGATATGGTGAATCATACGTTTAGCATGTCACAAAGTTCCTTTGAGCATCATCCGGCAGAGGAGGTGGTTGACAAGGTTGTGAAAGAGGCAATAAGCAAGCCATGGCTACCCTTGCCCTTGGGACTCAAACCTCCATCCACAGATAGTGTGTTGGTTGAGCTTTCAAGGCAAGGCATTTGCAGCATCCCTCCTAAGGGTTCAAACTCTGGCTGA 1812 0.4365 MVCTANDLQEWKDFPKGLKVLLLEGDSVSAAEVRAKLEAMDYNVSTFCDENEALSAISSRSESFHIAIVEVSSSSNQGGFKFLENAKDLPTIMTSNNHCLNTMMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFSAGASVLCESLKPVKESVVSMLQLKTDNEQHESGVSIDIEKVYRFTDNDHEQSPGNDKYPAPSTPQLRQGTRLLDDGDCQEQTNCSTEKESGENDGESKSVETTCGNLESNEQFRQGTRLLEDGDCQEQINCSAEKECGEHDGESKSVETTCGNLNAETESTPQQRNSETTLAKEEVDLVDATKGETVASLHAQKRKVLSNTDRNIKSPNKAGVHSDACEIRTNRKKMKVDWTPELHKKFVKAVEQLGIDQAIPSRILELMKVEGLTRHNVASHLQKYRMHKRQILPKEEDRKWLNPREKSYCVQRPIMAFPPYHSNHTLPLAPVYPMWGQSGNQTAGMQIWGSPGYPMWQPTAESWHWKPFPGVHADAWGCPVLPVPPPQAPCFPYSQNMPALLNADMVNHTFSMSQSSFEHHPAEEVVDKVVKEAISKPWLPLPLGLKPPSTDSVLVELSRQGICSIPPKGSNSG 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01502 603 Pfam Myb-like DNA-binding domain 366 415 IPR001005 -
Cca11g01502 603 PANTHER TRANSCRIPTION ACTIVATOR GLK1 246 599 IPR044825 GO:0003700|GO:0045893
Cca11g01502 603 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 246 IPR044825 GO:0003700|GO:0045893
Cca11g01502 603 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Cca11g01502 603 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 360 419 IPR017930 -
Cca11g01502 603 Pfam Response regulator receiver domain 20 127 IPR001789 GO:0000160
Cca11g01502 603 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 246 599 - -
Cca11g01502 603 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 1 246 - -
Cca11g01502 603 MobiDBLite consensus disorder prediction 193 223 - -
Cca11g01502 603 SMART REC_2 18 128 IPR001789 GO:0000160
Cca11g01502 603 MobiDBLite consensus disorder prediction 183 246 - -
Cca11g01502 603 Gene3D - 18 139 - -
Cca11g01502 603 SUPERFAMILY Homeodomain-like 361 420 IPR009057 -
Cca11g01502 603 SUPERFAMILY CheY-like 16 135 IPR011006 -
Cca11g01502 603 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 363 418 IPR006447 GO:0003677
Cca11g01502 603 Gene3D - 359 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01502 Cca-Chr11 37961893 37968773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01502 1 596 Response Regulator Gene Family AT4G18020 47.326 3.35e-141 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Cca11g01502 Response_reg 1.5e-07 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01502 - - ccaj:109791214 1211.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01612 06 31285444 31294775 Cca11g01502 11 37961893 37968773 PCT