Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01491 ATGGGAGGGGCATCACTTCCACCAGGATTTCGTTTCCATCCAACTGATGAAGAACTAGTGGGATACTACCTTAAGAGAAAAGTGGAGGGGCTTGAAATTGAGCTTGAAGTTATCCCCGTCATTGATTTTTACAAATTTGATCCATGGGAGTTGCCGGAGAAGTCTTTCCTTCCAAAACGGGATTTGGAATGGTTTTTCTTTTGTCCAAGGGATCGCAAGTATCCAAATGGATCAAGAACAAATAGAGCTACCAAAGCTGGGTATTGGAAAGCCACCGGAAAAGATAGAAAGGTGGTGTGCCAGTCTAATCCATCCACTGTTACAGGGTACCGCAAGACCTTGGTTTTCTATCTTGGGAGGGCCCCTTTAGGTGATAGAACTGATTGGGTCATGCATGAGTATCGCCTCTGTGATGAGCTTGGCCAAGCCACACCATGTTTCCAGGGTAGTTTTGCTTTGTGCCGGGTTATTAAGAAGAATGAGAAGGCAAGTGCTTCACATGTAGAACACAAGGGCAAGAGGGCTGGAAGCAGTTCAATGAAAGGGAGTGACACCTCAATGAGATTCTCTAGTGAGCCATTCAGCAACTCTGGTGATGCTTCCTCTCAAGCAAGTCACCTGAATAATGACAGTCGTTATTCAAGCCCTATTACTTCTCCTTCCAATGTGGCTCCTATGGGAGAGTTTAATCAACCTTCTGTGGAAACCAATCCTTCGAACTTCTGGATCTCCCCTGATATGATTCTTGATTCTTCAAAGGACTACCCTCAATTACAAGATGCTGTAGCTGAATATTTTCCGCGGTATGACCTACCAAGTGTGATGACACCATGGCAATCATTGGAACATCCAGAAACTTCATCTAGTTTGTCCTACTCAAATTTCAATGGAGAAGTTGAATTTTCTGATAATCTCAGTCAAATTGGCTGCATGTCGCCTTACTCAAGACAATGGAATTCCATGGGCTTTTATGGAAGTGGGAATGGAAATGGGGATGTCCCTTATGAAGGCTATGATCTAATTAACTCAATCTCATATCCAGAACCCTTTTGA 1053 0.4368 MGGASLPPGFRFHPTDEELVGYYLKRKVEGLEIELEVIPVIDFYKFDPWELPEKSFLPKRDLEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCQSNPSTVTGYRKTLVFYLGRAPLGDRTDWVMHEYRLCDELGQATPCFQGSFALCRVIKKNEKASASHVEHKGKRAGSSSMKGSDTSMRFSSEPFSNSGDASSQASHLNNDSRYSSPITSPSNVAPMGEFNQPSVETNPSNFWISPDMILDSSKDYPQLQDAVAEYFPRYDLPSVMTPWQSLEHPETSSSLSYSNFNGEVEFSDNLSQIGCMSPYSRQWNSMGFYGSGNGNGDVPYEGYDLINSISYPEPF 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01491 350 Pfam No apical meristem (NAM) protein 7 136 IPR003441 GO:0003677|GO:0006355
Cca11g01491 350 MobiDBLite consensus disorder prediction 178 231 - -
Cca11g01491 350 ProSiteProfiles NAC domain profile. 6 159 IPR003441 GO:0003677|GO:0006355
Cca11g01491 350 SUPERFAMILY NAC domain 4 159 IPR036093 GO:0003677|GO:0006355
Cca11g01491 350 Gene3D NAC domain 15 164 IPR036093 GO:0003677|GO:0006355
Cca11g01491 350 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 350 - -
Cca11g01491 350 MobiDBLite consensus disorder prediction 164 231 - -
Cca11g01491 350 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01491 Cca-Chr11 37753410 37756060 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01491 1 300 NAC Transcription Factor Family AT4G17980 54.934 2.07e-108 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca11g01491 NAM 6.4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01491 - - gmx:100792714 653.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01491 11 37753410 37756060 Cca11g01491 11 37753410 37756060 ECH