Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01489 ATGGGTTGCACCATGAGGGAAAAACACATCAGAGCCAATCGGAGACCCCGATCGGCGAAACCAGACCCCGATTCTTGCGACAAAGATGCCATATCCAAATCCATAGCTGAGACTGGTCTCAAGCCCTTCAAATACCATCTGGGTCTCAACGATTCTCCCCAGATACCGAATTCTAACCCTAATGTTGAGGAAACCGGGTGGGGTTACTGTACAGAGGAACAATTGGAAGAGATTCTGTTGAAAAACTTGGAGTTTATATACAACGAAGCTGTGTCCAAGCTCGTTGCATTGGGATATGATGAGGACGTTGCTGTCAAGGCGATACTGCGCAATGGGCATTGCTATGGTGGCATGGATGTGCTCACCAATATTTTGCATAATTCCTTAGCGTTTTTGAATAGTAATAATAGTGATGGTGTAGGTGGGGGTGGAGGTGGTTATAGTAATAATAATAATAGTGGGAATTTGGATGAGTCTGAGCCTGTGTTCTCTGATTTGAGGCAGTTGGAGGAGTACTCTTTGGCGGGTATGGTGTGTTTGTTGCAACAGGTGAGGCCTCATTTGAGCAAAGGGGATGCCATGTGGTGTTTGCTCATGAGTGATCTTCATGTTGGGAGGGCTAGTGCTATGGAAATTCCGGTGCCCGGTAACGGGAGCCCCGCGGCGCCGGTGGCCACCGGTGGTGAGGGTGGTGGGAATTCGGTTGGTGTTATGGCCCCGGCTTTGTGTAGGTTCCATGGGGGGTGGGGATTTGGTAATGGGGGAGGGTTGGAATTTCCTGTGAATGGGATATTCTCTTGTGGTGCAGAGATGAATTTGCAGCTGCAAAGAGACATTGAGTTCCCTAAGAGGTTTAATCTTTCTCCTTCAATGAAGTCCTTGTTGAAGAGAAATGTTGCTATGTTTGCTGCTGGTTTTAGGGCAAACTCTAAGCAATTGCAGGCACAGGCAAAGGTTGTTCCTGGCCGGAGTGCTGCACCTAATTTGGATTCTACGGCTGTGGCCGGGACGGAAACTCGGGCGGAGCAGTCCGGACGAGATTCACAGAATCTTGATAGCCAGGATGCTGTGAATTCGGTGCTGAGTAAATTTCGTGATTTGAATCTTGATGAGAATTTGGAGCTTGTGGCTGAAGATCAGAAGGATGAGGTGATAGTTACATTATTTCATCAGATTAAGGATCTTGAGAAACAGGTTAACGAACGGAAGGATTGGGCTCATCAGAAGGCAATGCAGGCAGCAAGAAAGTTAAGCAGTGATCTGACTGAGCTCAAAATGTTGCGGATGGAAAGAGAGGAGACTCAAAAATTGAAGAAAGGGAAACCGGTGCTTGAAGACACAACAATGAAGAGGCTCTCGGAGATGGAGAATGCTTTGAGAAAGGCCAGTGGTCAACTGGACCTTGCAAATGCAGCTGTGAGGAGACTAGAAACTGAGAATGCAGAAATGAAAGCAGAGATGGAGGCTTCCAAATTAAGCGCATCAGAGTCGGTGACAGCTTGCTTAGAAGTTGCAAAAAGGGAGAAAAAATGCTTAAAGAAACTTCTAGCTTGGGAAAAACAGAAAGCTAAGCTGCAGCAAGAGATTTCTGATGAAAAAGAGAGGATATCGAAGACACAAGAAATATTGGTTCAGATTAGACAGGGTCAAAAGGAAGCTGAGGTTAAGTGGAAGGATGAGATGAAGGCTAAAGAGGAAGCTTTAGCACTAGTTGAGGAGGAACGCCGCTCTAAGGAAGCAGCTGAGTCTAACAATAAGAGGAAGCTCGAGGCTTTGCGTCTGAAGATAGAGATAGATTTCCAGCGTCACAAGGATGATCTTCTAAGACTCGAGCAGGAGCTTTCGCGCCTGAAAGCATCTGCTCAGTCTGCTGAGTTGCATCACCAATCAAGCACGTCACCGACAAGCGACTCTGAGGGTGCAAAGCCCCAAAGGGAGACCATTGCCAGGCTGCTCCAAGAATTGGATAATCTTGAGGATTTTTCAGAGAAAGAAGTGAATAGCAACAGAGAATGCATTATATGTATGGAAGATGAAGTCTCCATAGTTTTCTTGCCATGTGCACACCAAGTTATGTGTGCTAGTTGCAGTGATGAGTATGGAAGAAAAGGAAAGGCTGCTTGTCCTTGCTGCAGGGTTCAAATCCAACAGAGAATCCGTGTATTTGGGGCAAGTTCCTAA 2181 0.4649 MGCTMREKHIRANRRPRSAKPDPDSCDKDAISKSIAETGLKPFKYHLGLNDSPQIPNSNPNVEETGWGYCTEEQLEEILLKNLEFIYNEAVSKLVALGYDEDVAVKAILRNGHCYGGMDVLTNILHNSLAFLNSNNSDGVGGGGGGYSNNNNSGNLDESEPVFSDLRQLEEYSLAGMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASAMEIPVPGNGSPAAPVATGGEGGGNSVGVMAPALCRFHGGWGFGNGGGLEFPVNGIFSCGAEMNLQLQRDIEFPKRFNLSPSMKSLLKRNVAMFAAGFRANSKQLQAQAKVVPGRSAAPNLDSTAVAGTETRAEQSGRDSQNLDSQDAVNSVLSKFRDLNLDENLELVAEDQKDEVIVTLFHQIKDLEKQVNERKDWAHQKAMQAARKLSSDLTELKMLRMEREETQKLKKGKPVLEDTTMKRLSEMENALRKASGQLDLANAAVRRLETENAEMKAEMEASKLSASESVTACLEVAKREKKCLKKLLAWEKQKAKLQQEISDEKERISKTQEILVQIRQGQKEAEVKWKDEMKAKEEALALVEEERRSKEAAESNNKRKLEALRLKIEIDFQRHKDDLLRLEQELSRLKASAQSAELHHQSSTSPTSDSEGAKPQRETIARLLQELDNLEDFSEKEVNSNRECIICMEDEVSIVFLPCAHQVMCASCSDEYGRKGKAACPCCRVQIQQRIRVFGASS 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01489 726 MobiDBLite consensus disorder prediction 321 354 - -
Cca11g01489 726 ProSiteProfiles Zinc finger RING-type profile. 672 712 IPR001841 -
Cca11g01489 726 MobiDBLite consensus disorder prediction 330 354 - -
Cca11g01489 726 Coils Coil 452 493 - -
Cca11g01489 726 MobiDBLite consensus disorder prediction 1 28 - -
Cca11g01489 726 SMART ring_2 672 711 IPR001841 -
Cca11g01489 726 Coils Coil 600 627 - -
Cca11g01489 726 Pfam Zinc finger, C3HC4 type (RING finger) 669 717 - -
Cca11g01489 726 Coils Coil 508 542 - -
Cca11g01489 726 MobiDBLite consensus disorder prediction 620 643 - -
Cca11g01489 726 Pfam Family of unknown function (DUF6592) 82 210 IPR046527 -
Cca11g01489 726 SUPERFAMILY RING/U-box 653 718 - -
Cca11g01489 726 PANTHER OS05G0141500 PROTEIN 1 725 IPR046934 -
Cca11g01489 726 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 725 - -
Cca11g01489 726 Coils Coil 554 591 - -
Cca11g01489 726 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 657 723 IPR013083 -
Cca11g01489 726 MobiDBLite consensus disorder prediction 620 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01489 Cca-Chr11 37707950 37714293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01489 646 722 C3H Transcription Factor Family AT1G73950 36.905 8.23e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01489 - - gmx:100797917 1258.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01593 06 31095265 31098782 Cca11g01489 11 37707950 37714293 PCT