Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01486 ATGCCAGTTCCACTTGCCCCCTACCCAACACCACCAGCTCCCTATACACCACCAGCTAATGGTGCACAGAGTCAACTTGTCTGTTCAGGGTGTAGAAACCTTCTAGTCTTTCCAGTTGGAGCCACCTCAGTGTGCTGTGCAGTTTGCAATGCAGTCACAGCAGTGCCGCCTCCTGGCACAGAAATGGCCCAGCTAGTTTGTGGAGGTTGCCATACTTTACTCATGTACATCAGGGGAGCGACAAGTGTCCAATGCTCTTGTTGTCACACGGTCAATCTAGCTTTGGAAGGTATTATACTATTAATGGACTCTGAGGTTTAA 321 0.4922 MPVPLAPYPTPPAPYTPPANGAQSQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEGIILLMDSEV 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01486 106 Pfam LSD1 zinc finger 28 52 IPR005735 -
Cca11g01486 106 Pfam LSD1 zinc finger 67 91 IPR005735 -
Cca11g01486 106 PANTHER PROTEIN LSD1 1 97 IPR040319 -
Cca11g01486 106 PANTHER PROTEIN LOL1 1 97 - -
Cca11g01486 106 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 64 93 IPR005735 -
Cca11g01486 106 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 25 55 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01486 Cca-Chr11 37633395 37636049 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Cca11g01486 zf-LSD1 3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01486 - - gmx:100306356 175.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01592 06 31089340 31091606 Cca11g01486 11 37633395 37636049 PCT