Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01482 ATGGCTCCCACCACCGCGCGATTTCCCTTCGCCGCCGTGCCGCCCGCCTCCGAGCCCTTCCCCGCCGCCGCATACGACGGCCCCCCTTCCCCGATGAAGGCCTGCTCCACCCTCGCCAAGAAGAAGCGCGGCCGTCCCCGGAAGTACTCGCCGGACGGTAACATTGCCCTCGGCCTCGCTCCCACCCATGTCTCTCCTCCTCcctccgccgctggggccgccgcctccggcggcggcgactctgctggcacggcctccgcTGACGGTCCGGCGAAGAAGCACCGCGGAAGGCCTCCCGGGTCTGGGAAGAAACAGATGGATGCGCTTGGAGCTGGTGGGGTTGGATTCACTCCCCACGTGATCATTGTGGAGTCTGGCGAGGACATCACAGCAAAAATTATGGCTTTTTCTCAGCAAGGGCCTCGCACAGTTTGTATTCTTTCTGCTATTGGTGCAATCTGTAATGTCACCCTTCGACAGCCTGCATTGTCTGGTGGTATTGCTACATTTGAGGGCCGATTTGAGATTATATCTTTATCAGGTTCTTTGCAGCTATCTGAAAGTAATGGTGAACGTAGCAGAACAGGCACTTTGAATGTAACCCTGGCAGGGTCTGATGGACGTGTTTTGGGTGGCGGAGTTGCCGGAATGCTAACTGCAGCATCAACTGTACAGGTCATTGTGGGTAGCTTTATCGTGGATGGGAAAAAATCGAGCTCGAATGTCCTGAAATCTGGGTCTTCTTCTGCACCACCACCCCATATGCTAAACTTTGGTGCACCTACGACCCCAACTAGTCCTACCTCTCAAGGGCCTTCAACTGAGTCCTCTGAAGAACATGATCAGGCTCCTTTTTGTAGAGCCCCTCCTGGACCTGGACTCTTCAATAATGCGAGTCAGCCCATTCATAATATGCCAATGTACCATCATCCTCTATGGGCTGGCCAAACTCATCAGTGA 960 0.5083 MAPTTARFPFAAVPPASEPFPAAAYDGPPSPMKACSTLAKKKRGRPRKYSPDGNIALGLAPTHVSPPPSAAGAAASGGGDSAGTASADGPAKKHRGRPPGSGKKQMDALGAGGVGFTPHVIIVESGEDITAKIMAFSQQGPRTVCILSAIGAICNVTLRQPALSGGIATFEGRFEIISLSGSLQLSESNGERSRTGTLNVTLAGSDGRVLGGGVAGMLTAASTVQVIVGSFIVDGKKSSSNVLKSGSSSAPPPHMLNFGAPTTPTSPTSQGPSTESSEEHDQAPFCRAPPGPGLFNNASQPIHNMPMYHHPLWAGQTHQ 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01482 319 Gene3D - 118 244 - -
Cca11g01482 319 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 32 282 - -
Cca11g01482 319 SMART AT_hook_2 92 104 IPR017956 GO:0003677
Cca11g01482 319 SMART AT_hook_2 40 52 IPR017956 GO:0003677
Cca11g01482 319 CDD DUF296 117 231 IPR005175 -
Cca11g01482 319 Pfam Plants and Prokaryotes Conserved (PCC) domain 118 231 IPR005175 -
Cca11g01482 319 ProSiteProfiles PPC domain profile profile. 112 253 IPR005175 -
Cca11g01482 319 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 32 282 IPR039605 GO:0003680
Cca11g01482 319 MobiDBLite consensus disorder prediction 241 302 - -
Cca11g01482 319 MobiDBLite consensus disorder prediction 259 279 - -
Cca11g01482 319 SUPERFAMILY AF0104/ALDC/Ptd012-like 116 232 - -
Cca11g01482 319 MobiDBLite consensus disorder prediction 1 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01482 Cca-Chr11 37550419 37554771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01482 25 319 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 49.405 6.92e-80 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01482 - - ccaj:109816712 585.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01589 06 31048913 31052243 Cca11g01482 11 37550419 37554771 PCT