Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01480 ATGGCTGGTTTGGATTTAGGAAGCTTTGTTCAAAACCTTCACAGACCGGACTTGCACTTGCAGCAGCACCACCACCGGGACTCGGAGGAGCAAGAGAGCACTCCACCGAACCGCGGAACGGGGGCGTTTGATGAGGATGACCGAAGCCAAGGCCTGGAGCTAGCTTCGGGGGGACCCGGCGACGTGGTGGGGCGGCGTCCACGTGGGAGGCCGCCGGGGTCCAAGAACAAGCCGAAGCCGCCGGTCATAATCACCAGAGAGAGCGCCAACACGCTCAGGGCGCACATCCTCGAAGTCGCCAGCGGCTCCGACGTCTTCGACTGCCGCGGGATCTGCATCCTCAGCGGCAGCGGCACCGTCACCAATGTCAGTCTCCGGCAGCCCGCGACTGCCGGAGCCGTCGTCACGCTGCACGGGCGGTTCGAGATTCTCTCGCTCTCTGGCTCGTTCCTGCCGCCGCCGGCTCCGCCGGGGGCGACGAGTCTGACGATATACCTGGCCGGCGGTCAGGGGCAGGGGGTCGGAGGGAGCGTGGTGGGGGAGCTGACCGCGGCGGGGCCGGGGATTGTGATTGCGGCGTCGTTTACGAACGTGGCTTATGAGAGGCTGCCGTTGGAGGAGGAGGAGCAGCTTCAGATTCAGCCACCCGCTACGACGTCGTCTCAGGGCGTTTCGAATAACAACGCAAACCCTTTCCCTGACCCTTCTTCGGGGCTTCCTTTCTTCAATTTGCCGCTTAATATGCAGAATGTTCAGTTACCCGTGGAGGGGTTTATTGCAACTCCTTATATTATAAGTAGTGAAGCTGTAGTAGGCTTTTGA 822 0.6144 MAGLDLGSFVQNLHRPDLHLQQHHHRDSEEQESTPPNRGTGAFDEDDRSQGLELASGGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVASGSDVFDCRGICILSGSGTVTNVSLRQPATAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLTIYLAGGQGQGVGGSVVGELTAAGPGIVIAASFTNVAYERLPLEEEEQLQIQPPATTSSQGVSNNNANPFPDPSSGLPFFNLPLNMQNVQLPVEGFIATPYIISSEAVVGF 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01480 273 MobiDBLite consensus disorder prediction 17 83 - -
Cca11g01480 273 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 260 IPR014476 GO:0003680
Cca11g01480 273 MobiDBLite consensus disorder prediction 208 232 - -
Cca11g01480 273 MobiDBLite consensus disorder prediction 212 232 - -
Cca11g01480 273 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 1 260 - -
Cca11g01480 273 Gene3D - 92 218 - -
Cca11g01480 273 MobiDBLite consensus disorder prediction 17 33 - -
Cca11g01480 273 ProSiteProfiles PPC domain profile profile. 76 216 IPR005175 -
Cca11g01480 273 SUPERFAMILY AF0104/ALDC/Ptd012-like 89 215 - -
Cca11g01480 273 CDD DUF296 93 167 IPR005175 -
Cca11g01480 273 Pfam Plants and Prokaryotes Conserved (PCC) domain 107 197 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01480 Cca-Chr11 37508134 37511721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01480 1 258 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 65.646 1.49e-87 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01480 - - pvu:PHAVU_003G230600g 382.874