Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01478 ATGGCTGCTGCAGGGATTGGCCTTGTTTCGGTGACCCAGATCCAAAATTTGTCTAaatcccaacaccaacactacctccaccacaaaccaaacactacctccaccccaaaccaaaccctaactccaccaccaCTCGGATCGATGTGGAACCCAAGGGACCTAGAAGATGACTCGTGGGAGGTCAGAGCCTTTGCCGAAGACACCAACAACGTCATGGGCACCACTTGGCCTCCAAGGTCCTACACATGCACCTTCTGCAGAAGAGAGTTCCGTTCGGCACAAGCTCTCGGTGGCCACATGAACGTTCACCGCCGCGACCGTGCTCGGCTCCACCAAGCCTCTCCCAACAACACTATCTCTCCCCTCTCTCTTGCACATCCCTCTTCTTCTTTCCTTAACATTAACATCCCTCACTCTCATCAGGAACATCTTGTTGCAAACGGCGGCTTCTGCCTCTTGTACCCCTTCCCTAGCCCTAACACTGCTGCTCCATTTCCCACTCTTAACCACCACACTGCGTTGAATAATAATGCATGTGGTGACTCACCCTCCACTCTTTTCTCAGTCTCTCCCCATTCTAATCACACTCCAAACAATTTTATGCCTAGTTCCTTTGATTTCTCGATGCCTCAGCCTGCTTCGGAGATGCCTGATTTTTCTTCTTACTCATTAGGCTCTGCAAAAGTGGAACTAGAACCCGCAACCTCTTCTGTCAATAATGGCAGCCACGATGAGGAGCTTGATCTAGAACTCCGCTTGGGAAATAGATCAACATCAACATGA 783 0.4521 MAAAGIGLVSVTQIQNLSKSQHQHYLHHKPNTTSTPNQTLTPPPLGSMWNPRDLEDDSWEVRAFAEDTNNVMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQASPNNTISPLSLAHPSSSFLNINIPHSHQEHLVANGGFCLLYPFPSPNTAAPFPTLNHHTALNNNACGDSPSTLFSVSPHSNHTPNNFMPSSFDFSMPQPASEMPDFSSYSLGSAKVELEPATSSVNNGSHDEELDLELRLGNRSTST 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01478 260 MobiDBLite consensus disorder prediction 20 52 - -
Cca11g01478 260 PANTHER OS07G0101800 PROTEIN 51 258 - -
Cca11g01478 260 MobiDBLite consensus disorder prediction 233 260 - -
Cca11g01478 260 Gene3D Classic Zinc Finger 70 122 - -
Cca11g01478 260 Pfam C2H2-type zinc finger 81 105 - -
Cca11g01478 260 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Cca11g01478 260 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Cca11g01478 260 SUPERFAMILY beta-beta-alpha zinc fingers 78 108 IPR036236 -
Cca11g01478 260 PANTHER ZINC FINGER C2H2-TYPE/INTEGRASE DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 51 258 - -
Cca11g01478 260 SMART c2h2final6 81 103 IPR013087 -
Cca11g01478 260 MobiDBLite consensus disorder prediction 20 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01478 Cca-Chr11 37392595 37394030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01478 48 254 C2H2 Transcription Factor Family AT4G17810 39.545 1.94e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca11g01478 zf-C2H2_6 5.6e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01478 - - pvu:PHAVU_003G230700g 280.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01478 11 37392595 37394030 Cca11g01478 11 37392595 37394030 ECH
Cca06g01586 06 31016020 31016941 Cca11g01478 11 37392595 37394030 PCT