Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01477 ATGGATGCTTCGTTCAACAACACTACTTATGAAAGGCTTCTTTGGAGGATGAAGACCCTTAATGCAAGGAGGTTCAATTGGGTCACCCGGTGCAAGTGTGGTGTTGCTCAATCATTACTTATGAGAGGAGTCTTCAAAATCATCCCATTTCTCTTGGTTCCTTTAAAGTATCACCTCTTGGATTCCTTGGCCTTGGCATATTTCCATGATCGGTTCTATCGTTACCTCCCACAGAAGGGTCAAGTGGTGGGAGGAAGCGTGGTTGGACTACTGGTTGCTTCGGAGCCTGTGGTGATCATGGATGCTTCGTTCAACAACACTACTTATGAAAGGCTTCTTTGGAGGATGAAGACCCTTAATGCAAGGAGGTTCAATTGGGTCACCCGGTGCAAGTGTGGTGTTGCTCAATCATTACTTATGAGAGGAGGTAATTCAACTACTCCACTTTTCCATGGTTTGCCTCCTAATCTTTCTAAATTTTGTTCAAATGTCATATGA 498 0.4398 MDASFNNTTYERLLWRMKTLNARRFNWVTRCKCGVAQSLLMRGVFKIIPFLLVPLKYHLLDSLALAYFHDRFYRYLPQKGQVVGGSVVGLLVASEPVVIMDASFNNTTYERLLWRMKTLNARRFNWVTRCKCGVAQSLLMRGGNSTTPLFHGLPPNLSKFCSNVI 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01477 165 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 79 159 - -
Cca11g01477 165 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 79 159 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01477 Cca-Chr11 37376688 37380432 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01477 79 112 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 64.706 8.72e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01477 - - gmx:100795257 66.2402