Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01474 ATGGAGGAATTAAACAAACCAATGGATGCATCAGCAACCAGCTGGTTATCTGATTTGGAAATGGATGATTACAATTTATTTCCAGATGAATGTCCCCTGGACTTGAACTTGTTTGATTGTGATGAGCAAGAGTTTCTTTCACAAGACATAGCTAGTGCCCTACAAGAGCAGACACAGACCCTGCACCAATCTCTGTCTTCGGATCAGTGCCCTTCCAAAACCATGAGCAACTCATCCACTGATGAAAGCAATTTTGACTTTGAGAGACCAACCAAGTTGCTGAAAACGACAAGCAGTAGTTGTAACTCTGACTCATCCAACATCACCAAAACCCTTTCACCAAAACTTTCCCCATCATCTTCCTTCTCCTCCTTCCAGTCTCAGATTCTCTCCTTTGACAACCCAAACTCATCCTCTGCCAGCAACACCCAGTTTTACGGGTTTGACTGTGCTTTAAACCCAACACAGACTGATTTGGTGTCAGTGCCAGTGCCCCAATTAGGAAAACAGCGTTTACCAACTCAAACACCAAAAGGATCCCCTAAAACTCAAAACTTTGAAACAAAACCCTCACATGGTAAGAGGTCTCCTGCACACGCTCAGGATCACATCATGGCCGAGAGAAAGCGAAGAGAGAAGCTCAGCCAGAGTTTCATTGCTCTTGCAGCTCTTGTTCCTGGCCTAAAAAAGATGGACAAGGCTTCTGTGTTGGGGGACGCTATCAAATACGTGAAAGAGCTTAAAGAGCGATTAGCTGTGCTGGAAGAGCAGAGCAAGAAAACAAGGGCAGAGTCTGTGGTGGTTCTGAACAAACCAGACCTCTCTGGCGATGATGATTCCTCTTCATGTGATGAGAGCATTGGTGCTGATCATAGTGTCAGTGAATCACTGTTTGAAGTTGAATCAAGGGTATCGGGGAAGGAGATGCTGCTTAGGATCCACTGTCAGAAGCAAAAGGGTCTTCTCGTCAAGTTACTAGCCGAGATTCAAAGTTATAACTTATTCGTTGTTAATAGCAGTGTCTTACCCTTCGGTGATACTATCCTTGACATCACAATAGTTGCACAGATGGGGGAGAGTTTCAATTTGACCACGAAGGAACTTGTCAAGAACCTACGCCTGGCTGCATTTAAGGCAATGGCATAA 1146 0.4468 MEELNKPMDASATSWLSDLEMDDYNLFPDECPLDLNLFDCDEQEFLSQDIASALQEQTQTLHQSLSSDQCPSKTMSNSSTDESNFDFERPTKLLKTTSSSCNSDSSNITKTLSPKLSPSSSFSSFQSQILSFDNPNSSSASNTQFYGFDCALNPTQTDLVSVPVPQLGKQRLPTQTPKGSPKTQNFETKPSHGKRSPAHAQDHIMAERKRREKLSQSFIALAALVPGLKKMDKASVLGDAIKYVKELKERLAVLEEQSKKTRAESVVVLNKPDLSGDDDSSSCDESIGADHSVSESLFEVESRVSGKEMLLRIHCQKQKGLLVKLLAEIQSYNLFVVNSSVLPFGDTILDITIVAQMGESFNLTTKELVKNLRLAAFKAMA 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01474 381 Coils Coil 237 264 - -
Cca11g01474 381 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 203 264 IPR036638 GO:0046983
Cca11g01474 381 MobiDBLite consensus disorder prediction 62 85 - -
Cca11g01474 381 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 5 380 - -
Cca11g01474 381 PANTHER BHLH TRANSCRIPTION FACTOR 5 380 - -
Cca11g01474 381 SMART finulus 204 253 IPR011598 GO:0046983
Cca11g01474 381 MobiDBLite consensus disorder prediction 169 209 - -
Cca11g01474 381 Gene3D - 191 264 IPR036638 GO:0046983
Cca11g01474 381 MobiDBLite consensus disorder prediction 169 187 - -
Cca11g01474 381 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 198 247 IPR011598 GO:0046983
Cca11g01474 381 MobiDBLite consensus disorder prediction 188 209 - -
Cca11g01474 381 CDD bHLH_AtNAI1_like 199 271 - -
Cca11g01474 381 Pfam Helix-loop-helix DNA-binding domain 202 247 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01474 Cca-Chr11 37291697 37294131 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01474 8 375 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.870 1.04e-59 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca11g01474 HLH 4.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01474 - - gmx:100788128 595.504