Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01473 ATGACATCAATGGAAGAATCATGGACTAGTTGGTTATGTGATGTGGAACCAGATGATTATAGTTTCATTGGTCAATCAGAAATAAAGGTGGATGATGTGAATGGAAGTTTGGCATCTCATCATGATATAGCCATTGCATCAGAGGAGAACCCACAATGCTCATTTTCCACGGAGACTCACTCTTTAGTGGCTAAGAGTGACTTAAAAAGGCCCTTCGAGTCACTAAAAACAGAACAACTCCCACAAAAGATAACTTCTCCATGCTCCTACATTCTTTCGTTTGACAACACGAATCCACCACCGTTAAAGGTTGAATCAGTCTCGAAGCCAGGAACCAAGGTTGACACAAACCGTGGGAAAGCTTTGCCTTCCAAGAATGAACCAAGACGCGTTACTCAGGAGAACAAGAAAATGAGCTCATTGGCCACAACTTCTCACCACACTAAAGATCACATAATTGCCGAGAGAATGAGGAGAGAAAAGATTAGCCAACAGTTCATTGCCCTCTCAGCTCTCATTCCGGACTTGAAAAAGATGGACAAGGTATCTGTGTTGGGGGAGGCTATAAGGTATGTGAGAGAGCTGAAGGGTCAAGTGAAGTTGCTGGAGGAGCAGAGCAAAAGGAAAAGCGAGGATTCTTTGGTGTTTGTAAAGAGACCTCAGGACGAGGATGTCTCAGACACTTCGTCAAATTCGTGTGAGTTTGGAAACTTTGATGATTCATCGAAAACAAATTTGTCACTGCCAGAAGTTGAAGCAAGGGTGTCAAAGAAAAACGTGCTGATTCGAATCCTGTGCAAGAAAGAAAACGTAGTTCTGGTGAACATATTTAGGGAGATAGAGAAACTTCATCTTTCAGTTATCAGCAGCAGCGCCTTGTCTTTCGGTTCCTCTGTCCTGGATACGACCATCGTGGCCGAGATGGAGGATGAATTCAACATGAATGTGGAGGAACTGGCTAGAAACCTCAGAGTTGGACTGATGCAATTTGTTTAG 996 0.4337 MTSMEESWTSWLCDVEPDDYSFIGQSEIKVDDVNGSLASHHDIAIASEENPQCSFSTETHSLVAKSDLKRPFESLKTEQLPQKITSPCSYILSFDNTNPPPLKVESVSKPGTKVDTNRGKALPSKNEPRRVTQENKKMSSLATTSHHTKDHIIAERMRREKISQQFIALSALIPDLKKMDKVSVLGEAIRYVRELKGQVKLLEEQSKRKSEDSLVFVKRPQDEDVSDTSSNSCEFGNFDDSSKTNLSLPEVEARVSKKNVLIRILCKKENVVLVNIFREIEKLHLSVISSSALSFGSSVLDTTIVAEMEDEFNMNVEELARNLRVGLMQFV 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01473 331 Coils Coil 185 212 - -
Cca11g01473 331 Gene3D - 143 214 IPR036638 GO:0046983
Cca11g01473 331 Pfam Helix-loop-helix DNA-binding domain 151 195 IPR011598 GO:0046983
Cca11g01473 331 MobiDBLite consensus disorder prediction 120 134 - -
Cca11g01473 331 PANTHER BHLH TRANSCRIPTION FACTOR 4 330 - -
Cca11g01473 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 149 210 IPR036638 GO:0046983
Cca11g01473 331 SMART finulus 152 201 IPR011598 GO:0046983
Cca11g01473 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 146 195 IPR011598 GO:0046983
Cca11g01473 331 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 4 330 - -
Cca11g01473 331 MobiDBLite consensus disorder prediction 101 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01473 Cca-Chr11 37257628 37259520 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01473 136 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.949 9.41e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca11g01473 HLH 7.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01473 - - gmx:100803386 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01582 06 30948104 30950070 Cca11g01473 11 37257628 37259520 PCT