Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01472 ATGATGCAAATCTCGTCGACCATGTACTTGCCAGAACTTGGAATAATGGAGGACCCCACTTTGTTTCATCAGTACCCGATGGATCCTTTTGCATTCCAGCTCGAAGATGTTGACTTTGAGTCCCTCTCTGCGTCCCCAATGAGTTCTTCCTCTCACAAGCGCTTCAACTCCGAAAGCACCCAAAACTCTTCCCTCACACAAAGTCCTGAACAATCTGTTGCACCTGCAAGACCAACCAAGCAACCCAAGACCTGGAGTGCTTACGGTAGTGACATGATGGCTCCCAAGGTTTCATCCTCCAAAATCATCTCTTTTGAGAACTCCAATGCGTCTTCAGTTTCTTCCCGACAATTCTACAACCTGGATGCTGCCAAACTGAAGAAGCCTAAGATTGAAACTGGGTATGGTGAAAACTTTGATTTTACAGCTATGGTTTCTCAAGGTCTCTATGACGACAATAGTTTTCTAGACTATGATAACCGAGAGAAGAAGCTGATGGCTGCAACCACAACTACTAGAAACCCTATCCAAGCCCAAGATCACGTGATAGCCGAAAGAAAACGGAGGGAAAAGCTTAGCCAGAGGTTCATTGCTCTTTCTGCCATAGTTCCTGGACTCAAGAAGATGGACAAGGCTACCGTCTTGGAAGATGCTATAAAATACGTAAAACAACTACAGGAACGGGTGAAAACTCTGGAGGAACAAGCTGTGGATAAAACAGTTGAATCAGCCGTGTTTATAAAGAGATCTGTTGTTTTCACCGGGGATGAAAGCTCTTCCTCCGGTGAAGAATCCGACCAGTCACTCCCCGAAATCGAAGCAAGAATTTCTGGTAAACAAGTGCTGATCAGAATCCACTGCGACAAACACAGTGGACAAGCGGCTACTATACTAAAAGAATTAGAGAAGCATAATCTCACAGTTCAGAGTAGCAGCTTTTTGCCCTTTGGGAATAACACTCTTGACATATCTATTGTGGCTCAGGTAAATATATATTAA 999 0.4414 MMQISSTMYLPELGIMEDPTLFHQYPMDPFAFQLEDVDFESLSASPMSSSSHKRFNSESTQNSSLTQSPEQSVAPARPTKQPKTWSAYGSDMMAPKVSSSKIISFENSNASSVSSRQFYNLDAAKLKKPKIETGYGENFDFTAMVSQGLYDDNSFLDYDNREKKLMAATTTTRNPIQAQDHVIAERKRREKLSQRFIALSAIVPGLKKMDKATVLEDAIKYVKQLQERVKTLEEQAVDKTVESAVFIKRSVVFTGDESSSSGEESDQSLPEIEARISGKQVLIRIHCDKHSGQAATILKELEKHNLTVQSSSFLPFGNNTLDISIVAQVNIY 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01472 332 PANTHER BHLH TRANSCRIPTION FACTOR 1 330 - -
Cca11g01472 332 CDD bHLH_AtNAI1_like 178 250 - -
Cca11g01472 332 Pfam Helix-loop-helix DNA-binding domain 179 226 IPR011598 GO:0046983
Cca11g01472 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 181 236 IPR036638 GO:0046983
Cca11g01472 332 Coils Coil 215 242 - -
Cca11g01472 332 SMART finulus 182 231 IPR011598 GO:0046983
Cca11g01472 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 176 225 IPR011598 GO:0046983
Cca11g01472 332 Gene3D - 169 240 IPR036638 GO:0046983
Cca11g01472 332 MobiDBLite consensus disorder prediction 43 90 - -
Cca11g01472 332 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 1 330 - -
Cca11g01472 332 MobiDBLite consensus disorder prediction 43 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01472 Cca-Chr11 37208030 37210331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01472 139 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22760 47.000 2.40e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca11g01472 HLH 8.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01472 - - gmx:100798011 472.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01580 06 30919374 30921977 Cca11g01472 11 37208030 37210331 PCT