Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01470 ATGTTAGCTCCTTTCAACTCCTTCACTATTTTAAAGCTTGAATATCGAAGAGCTTATGTTACTACCCAAGTCAAAGGCAACTTGGCTAGACCCAATAAAGATCTAAGGGGACCCGAGACAGCATATCTTTCTGTAAATTACCTCGATCGTTTTCTTTTGTCACACTCCTTGACGGAAGATTCAGCATGGCCTATGCAGCTGTTGTCAGTTGCTTGTCTTTCACTTGCAGCAAAAATGGAAGAAACCAAAGTGCCACTTCTTTTGGACCTTCAGGTGATCGAGTCCAAGTTTCTTTTTAAGCCCAAAACAGTTCAGAGGATGGAGCTTTTGGTTATGGCCAGTCTCAAGTGGAGATTGCGTACTATAACCCCTTTTGATTTTATCCACCTTTTCATTGCCAAGCTTTCATGCTCTGCTTCCAGATGGCGAGATTTAAGTTACATTGTTTCTCGTGTCTCAGATGTTATTATCAGAACATGTCTAGTCATGGATTTCTCGGAGTTTTCACCATCCACAATAGCAGCAGCTGCACTGTTATGGGTAACCAACCAACGTATAGATGACAAGAAACCGGATTGCTTCCACAAGCATATAAGCATTGAGATGGTGCATACATGTTACAAACTAATGAAGCAGAAACTGATCATTCGCCGATCAGAATTTTTTTGGTCAAAGACTTCACAATTATTGCCCCGAAGTCCCACCTGTGTGCTTGATCATGCAGCTATGCAAGAAAGCAGCGATGCTCTCAAGCCCTGA 759 0.4216 MLAPFNSFTILKLEYRRAYVTTQVKGNLARPNKDLRGPETAYLSVNYLDRFLLSHSLTEDSAWPMQLLSVACLSLAAKMEETKVPLLLDLQVIESKFLFKPKTVQRMELLVMASLKWRLRTITPFDFIHLFIAKLSCSASRWRDLSYIVSRVSDVIIRTCLVMDFSEFSPSTIAAAALLWVTNQRIDDKKPDCFHKHISIEMVHTCYKLMKQKLIIRRSEFFWSKTSQLLPRSPTCVLDHAAMQESSDALKP 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01470 252 CDD CYCLIN 38 112 IPR013763 -
Cca11g01470 252 Gene3D - 121 195 - -
Cca11g01470 252 SMART Cyclin_C_2 122 247 IPR004367 -
Cca11g01470 252 PANTHER CYCLINS 38 244 IPR039361 -
Cca11g01470 252 Pfam Cyclin, N-terminal domain 38 119 IPR006671 -
Cca11g01470 252 PANTHER CYCLIN-D1-1-LIKE ISOFORM X1 38 244 - -
Cca11g01470 252 SMART cyclin_7 22 113 IPR013763 -
Cca11g01470 252 Gene3D - 38 120 - -
Cca11g01470 252 SUPERFAMILY Cyclin-like 38 119 IPR036915 -
Cca11g01470 252 Pfam Cyclin, C-terminal domain 122 214 IPR004367 -
Cca11g01470 252 SUPERFAMILY Cyclin-like 104 218 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01470 Cca-Chr11 37168249 37172815 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01470 38 215 Core Cell Cycle Gene Families AT1G70210 47.568 1.74e-49 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01470 K18810 - gmx:100799323 365.155