Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01469 ATGCGTCTCTTCTTTCTCTTCCTCTTTCTCTTCCTCCAATGTAACACCCTCCGTCTCCATGCCGCGCGCGTCTCCGAGTACAACGCGCTCCTCGCCTTCAAAGCCTCCTCCGTCACCGACGACCCCAGCCGCGCCCTGTCCTCCTGGACCCCCTCCACCCCGCACTGCACGTGGCTCGGCCTCACGTGCGACTCCCACCGTCACGTCATAGCTCTCAACCTCACGTCTCTCTCCCTCGCCGGGACCCTCTCAGACCACCTCTCCCACTTGCCCTTCCTCTCCAACCTCTCCCTCGCCGACAACAAGTTCTCAGGTCCCATCCCTCTCTCTTTCTCATCGCTCACCAACCTTCGCTTCCTAAACCTCTCCAACAACGTCTTCAACGCCACCTTCCCCTCCAAGCTTGCGCTTCTCGCCAACCTCCAAGTCCTCGACCTCTACAACAACAACATGACCGGccccctccccctcgccgtcgccgccatgcccctcctccgccacctccacctcGGCGGAAACTTCTTCTCCGGCCAGATCCCCCCGGAGTACGGCTCCTGGCGCCACATCCAATACCTCGCCCTCTCCGGCAACGAGCTCGCCGGCCACATCCCGCCGCACCTCGGCAACCTCACCTCGCTCCGGGAACTCTACATTGGCTACTACAACACCTACTCCGGCGGCATCCCGCCGGAGCTCGGAAACCTCTCCGGCCTCGTCCGCTTCGACGCCGCCTATTGCGGACTCTCCGGCGAGATTCCGCCGCAGCTCGGGAACCTCCAGAACCTGGACACGTTGTTTCTCCAGGTGAATGCGCTCTCCGGCTCCCTCACTCCCTCACTCGGGAACCTCAAGAGCCTCAAGTCGCTGGACCTCTCCAACAACATGCTCTCCGGCGAGCTCCACGGCGCGATTCCCGAGTTTGTGGGAGAGTTACCGGCGCTGGAGGTGTTGCAGCTTTGGGAGAACAACTTCACCGGGAGCATTCCGCAGAGCTTGGGGAGAAACGGAAAGCTTACTCTCGTTGACCTTTCGTCGAACAAGTTGACCGGGACTCTTCCTCCGGATATGTGCAACGGGAACCGTCTTCAGACGCTTATAACGCTGGGGAATTTTCTGTTTGGTCCTATTCCTGATTCGCTGGGCAAGTGTGAGTCTCTGAGTAGGATTCGCATGGGGGAGAATTTTCTGAACGGTTCTATTCCGACGGGCCTCTTTGGGCTTCCGAAGCTGACCCAGGTTGAGCTTCAGGACAATCTTCTCACGGGCCAGTTTCCCGAGGCTGCTTCCATTGCTGTTAATCTGGGCCAGATTAGTCTCTCCAATAACAAGCTTTCTGGGCCCTTGCCACCCTCCATTGGCAACTTCACCAGCATGCAGAAGCTTCTCCTTGACGGCAACAAGTTCTCCGGTCCAATCCCTCCCCAGATTGGCAAGCTGCAACAGCTTTCAAAAATTGATTTTAGCCACAACAAATTCTCGGGCCCCATTGCCCCTGAGATCAGCCAGTGCAAGCTTTTGACTTTCGTTGATCTCAGCCGCAACGACCTCTCTGATGAGATTCCAAACCAGATCACTTCCATGCGGATTTTGAATTACTTAAACCTTTCCAGGAACCATCTAGTTGGGTCCATTCCAGCCTCCATTGCCTCTATGCAGAGTTTAACTTCTGTCGATTTCTCCTACAACAATCTCTCTGGTTTGGTTCCGGGAACCGGGCAATTCGGTTACTTTAACTACACTTCTTTCTTAGGGAACCCTGAACTCTGTGGTCCTTATTTGGGTCCTTGTAAAGACGGGGTTGCCAATGGCCCTCGCCAGCCTCATGTGAAAGGCCCTCTATCTTCTTCCTTGAAACTATTGTTAGTTATTGGGTTGCTTGTGTGCTCCATTGCATTTGCTGTTGCAGCAATAATCAAAGCACGGTCTTTGAAAAAGGCCAGTGAAGCACGTGCGTGGAAATTAACTGCTTTCCAGCGTTTGGACTTCACTGTTGACGATGTTTTGGATTGCTTGAAGGAGGACAACATAATTGGAAAAGGGGGTGCCGGCATTGTTTACAAAGGGGCGATGCCGAATGGGGACAACGTTGCTGTGAAAAGGTTGCCCGCCATGAGCAGAGGGTCTTCCCATGATCATGGTTTCAATGCGGAGATTCAGACTCTGGGGAGGATTCGTCACAGACACATTGTTAGGCTTTTGGGGTTCTGTTCAAACCATGAGACTAATCTCTTGGTGTACGAGTACATGCCTAATGGAAGTTTAGGTGAGGTTCTTCATGGCAAGAAAGGGGGGCACTTGCATTGGGACACAAGGTATAAGATTGCTGTGGAGGCTGCCAAGGGCCTTTGTTACTTACACCATGACTGTTCACCACTAATTGTCCATCGAGATGTTAAGTCCAACAATATCCTTCTTGATTCCAATTTTGAAGCACATGTGGCTGATTTTGGGCTCGCTAAGTTCCTGCAAGATTCTGGAACATCTGAATGCATGTCTGCTATTGCCGGTTCCTATGGATACATAGCTCCAGAGTATGCCTACACGTTGAAAGTTGATGAGAAAAGCGACGTGTACAGCTTTGGGGTGGTTCTTCTGGAGCTTGTAACAGGAAGGAAACCTGTTGGGGAATTTGGTGATGGTGTGGACATTGTGCAATGGGTGAGGAAAATGACAGACTCAAACAAGGAAGGAGTTCTAAAAGTTCTTGATCCAAGACTTCCTTCAGTTCCACTTCACGAGGTGATGCATGTTTTCTATGTAGCCATGCTGTGTGTTGAGGAACAAGCAGTGGAGCGACCAACTATGCGTGAAGTTGTTCAAATTCTGACCGAGCTTCCAAAGCCACCAAACTCAAAACAGGGAGACTTGACAATTACGGAGACATCTTTGTCATCATCAAACAGTTTAGAGTCTCCAACCACGGCATCTAAGGAACCTAAAGATAATCAACATCCTCCTCAGTCGCCACCACCCGATCTTCTTAGCATTTGA 2991 0.5105 MRLFFLFLFLFLQCNTLRLHAARVSEYNALLAFKASSVTDDPSRALSSWTPSTPHCTWLGLTCDSHRHVIALNLTSLSLAGTLSDHLSHLPFLSNLSLADNKFSGPIPLSFSSLTNLRFLNLSNNVFNATFPSKLALLANLQVLDLYNNNMTGPLPLAVAAMPLLRHLHLGGNFFSGQIPPEYGSWRHIQYLALSGNELAGHIPPHLGNLTSLRELYIGYYNTYSGGIPPELGNLSGLVRFDAAYCGLSGEIPPQLGNLQNLDTLFLQVNALSGSLTPSLGNLKSLKSLDLSNNMLSGELHGAIPEFVGELPALEVLQLWENNFTGSIPQSLGRNGKLTLVDLSSNKLTGTLPPDMCNGNRLQTLITLGNFLFGPIPDSLGKCESLSRIRMGENFLNGSIPTGLFGLPKLTQVELQDNLLTGQFPEAASIAVNLGQISLSNNKLSGPLPPSIGNFTSMQKLLLDGNKFSGPIPPQIGKLQQLSKIDFSHNKFSGPIAPEISQCKLLTFVDLSRNDLSDEIPNQITSMRILNYLNLSRNHLVGSIPASIASMQSLTSVDFSYNNLSGLVPGTGQFGYFNYTSFLGNPELCGPYLGPCKDGVANGPRQPHVKGPLSSSLKLLLVIGLLVCSIAFAVAAIIKARSLKKASEARAWKLTAFQRLDFTVDDVLDCLKEDNIIGKGGAGIVYKGAMPNGDNVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWDTRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVQWVRKMTDSNKEGVLKVLDPRLPSVPLHEVMHVFYVAMLCVEEQAVERPTMREVVQILTELPKPPNSKQGDLTITETSLSSSNSLESPTTASKEPKDNQHPPQSPPPDLLSI 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01469 996 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 4 983 - -
Cca11g01469 996 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Cca11g01469 996 Gene3D Phosphorylase Kinase; domain 1 636 748 - -
Cca11g01469 996 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 4 983 - -
Cca11g01469 996 MobiDBLite consensus disorder prediction 946 982 - -
Cca11g01469 996 SUPERFAMILY L domain-like 338 596 - -
Cca11g01469 996 SUPERFAMILY RNI-like 72 373 - -
Cca11g01469 996 Gene3D Transferase(Phosphotransferase) domain 1 749 962 - -
Cca11g01469 996 ProSitePatterns Serine/Threonine protein kinases active-site signature. 793 805 IPR008271 GO:0004672|GO:0006468
Cca11g01469 996 SUPERFAMILY Protein kinase-like (PK-like) 664 942 IPR011009 -
Cca11g01469 996 SMART LRR_typ_2 551 574 IPR003591 -
Cca11g01469 996 SMART LRR_typ_2 283 307 IPR003591 -
Cca11g01469 996 SMART LRR_typ_2 311 335 IPR003591 -
Cca11g01469 996 SMART LRR_typ_2 162 186 IPR003591 -
Cca11g01469 996 SMART LRR_typ_2 336 359 IPR003591 -
Cca11g01469 996 SMART LRR_typ_2 479 503 IPR003591 -
Cca11g01469 996 SMART LRR_typ_2 138 161 IPR003591 -
Cca11g01469 996 SMART LRR_typ_2 114 137 IPR003591 -
Cca11g01469 996 MobiDBLite consensus disorder prediction 946 996 - -
Cca11g01469 996 ProSiteProfiles Protein kinase domain profile. 671 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01469 996 Gene3D Ribonuclease Inhibitor 184 300 IPR032675 -
Cca11g01469 996 Gene3D Ribonuclease Inhibitor 23 183 IPR032675 -
Cca11g01469 996 SMART serkin_6 671 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01469 996 Gene3D Ribonuclease Inhibitor 301 600 IPR032675 -
Cca11g01469 996 Pfam Protein tyrosine and serine/threonine kinase 673 942 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01469 Cca-Chr11 37139625 37143463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01469 24 972 Receptor kinase-like Gene Family AT5G65700 78.667 0.0 1536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca11g01469 PK_Tyr_Ser-Thr 2.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01469 - - gmx:100499646 1739.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01579 06 30892837 30897474 Cca11g01469 11 37139625 37143463 PCT