Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01462 ATGGGTATTCATCACGATGCTACTACGAACTCTGGTGACCATCACCTTATTCTAGGATTAGCTTTGACTAACACTCCATCACCACAATCCATTTCCAACAAGTTTGATCATGATCATGATCACACTCTTAGGCCAAAGCCTTATTCCTCCAAATCCAGTTTCATCAACTCCGAGGCTGAGCCATCATTAACCTTGGGTCTGTCCCGTGACAGTTACCGGCACCCCAAAAACATGGGACACAACAACAAAGTATCGTGTGAGGACCCTCTTGAACAGACTTCTCCTCACAGCGCTGTTTCCTCCTTCTCCAGTGGAAGGGTCAAGAGGGAGAGGGACCTTAGCTGTGAAGAAGTGGACGTGACTGAGACAGAGAGGGTTTCTTCAAGAGCCAGCGACGAAGAAGAAGACGGTACCACCGCTAGGAAGAAACTTAGGCTCACTAAAGAACAATCTGCTATGCTAGAAGAAAGCTTCAAACAACATAGTACCCTCAATCCTAAACAGAAGCAAGCTTTGGCAAAGCAGTTAAGTCTAACTCCTCGACAAGTTGAGGTGTGGTTCCAGAACCGGAGAGCCAGAACAAAGCTGAAGCAAACAGAGGTGGACTGCGAGTTCTTAAAGAAGTGTTGTGAAACATTAACTGACGAGAACAGAAGGTTACAGAAGGAGCTTCAAGAGTTGAAGGCACTGAAACTGGCTCAGCCTTTGTACATGCCTATGCCTGCGGCAACCCTCACCATGTGCCCCTCTTGTGAGAGGCTCGGTGGTGGCGTTAACGGTGGCGCTTCCCCTAAGACACCGTTCTCCATGGCTCCTAAGCCTCACTTCTTCAACCCCTTCGCCAACCCTTCTGCAGCATGTTAA 864 0.4838 MGIHHDATTNSGDHHLILGLALTNTPSPQSISNKFDHDHDHTLRPKPYSSKSSFINSEAEPSLTLGLSRDSYRHPKNMGHNNKVSCEDPLEQTSPHSAVSSFSSGRVKRERDLSCEEVDVTETERVSSRASDEEEDGTTARKKLRLTKEQSAMLEESFKQHSTLNPKQKQALAKQLSLTPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLAQPLYMPMPAATLTMCPSCERLGGGVNGGASPKTPFSMAPKPHFFNPFANPSAAC 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01462 287 SUPERFAMILY Homeodomain-like 131 198 IPR009057 -
Cca11g01462 287 ProSitePatterns 'Homeobox' domain signature. 172 195 IPR017970 GO:0000981|GO:0006355
Cca11g01462 287 Coils Coil 203 233 - -
Cca11g01462 287 MobiDBLite consensus disorder prediction 86 104 - -
Cca11g01462 287 Gene3D - 145 195 - -
Cca11g01462 287 SMART HOX_1 139 201 IPR001356 GO:0003677
Cca11g01462 287 CDD homeodomain 141 198 IPR001356 GO:0003677
Cca11g01462 287 MobiDBLite consensus disorder prediction 29 143 - -
Cca11g01462 287 PANTHER - 50 287 - -
Cca11g01462 287 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22 50 287 - -
Cca11g01462 287 MobiDBLite consensus disorder prediction 105 143 - -
Cca11g01462 287 Pfam Homeobox associated leucine zipper 197 231 IPR003106 GO:0006355|GO:0043565
Cca11g01462 287 ProSiteProfiles 'Homeobox' domain profile. 137 197 IPR001356 GO:0003677
Cca11g01462 287 MobiDBLite consensus disorder prediction 47 64 - -
Cca11g01462 287 Pfam Homeodomain 141 195 IPR001356 GO:0003677
Cca11g01462 287 SMART halz 197 240 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01462 Cca-Chr11 37033098 37034785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01462 1 287 Homeobox Transcription Factor Family AT4G37790 58.000 1.98e-96 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca11g01462 Homeodomain 2.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01462 K09338 - gmx:100807123 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01569 06 30792625 30794254 Cca11g01462 11 37033098 37034785 PCT