Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01459 ATGGGGAGGGCTCCTTGCTGTGACAAAGCCAACGTGAAGAGAGGTCCATGGTCGCCTGAAGAAGACTTCAAACTCAAATCTTATATCGAAGAACACGGCACTGGTGGCAACTGGATTGCCCTGCCCCAGAAAATAGGTCTCAAAAGGTGTGGGAAAAGCTGTCGCCTAAGATGGTTGAACTATCTTCGCCCAAACATCAAACACGGGGGTTTCTCAGAAGAAGAAGACAGCATAATTTGCAGCCTCTATGTTAACATTGGAAGCAGGTGGTCTATTATAGCAGCACAATTACCAGGTCGCACGGATAATGATATTAAGAACTATTGGAACACTAAGCTGAAGAAGAAGCTACTAGGCAAGCAAAGGAAGGAGCAACAAGCTCAAGCTCGTCGAGTTTGTAGCCTAAATCAAGAGATGAAGAGAGAAACTGAGAATTTGATGTTACCAGTGGGAGTTATTACCCAAACTCCTTATTGGCCTCAACACCATCCAATGACAAATGCTTCAACTTCAACCCAATACTCCGATCTCAAACACTTCCCTAACAGCATAGTCACTGCCACCATGAATTCACAATACTCATCATGTGACACTTCCTTGACACAAGACCAACTATATCCCTCAACAATGAACATGGTAACCACCGACACGTGTCACACGTCAACATCATCAAACGTATTTCAAGGGTTTGGGAACTTCCCCAGTGATTTGAGTGAGTTGGCCTGTGCGAACCCGCGAAAAATAGATGGTTCCATGCGGGGGTTTTATGGTTTGGAGTCCATGGACGTGGCCAATGGCAGCACAAACACGACTTCAACAGAAAGCACTAGTTGGGGAGATATAAGCTCTTTGGTTTACTCGCCTTTGGTTTCTGACTACGAACAAAGAATGCCTCAACATGTTACTTTTGAGGAGTCTAGTTACTTTGCGATGCAAACGTAA 942 0.448 MGRAPCCDKANVKRGPWSPEEDFKLKSYIEEHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDSIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLGKQRKEQQAQARRVCSLNQEMKRETENLMLPVGVITQTPYWPQHHPMTNASTSTQYSDLKHFPNSIVTATMNSQYSSCDTSLTQDQLYPSTMNMVTTDTCHTSTSSNVFQGFGNFPSDLSELACANPRKIDGSMRGFYGLESMDVANGSTNTTSTESTSWGDISSLVYSPLVSDYEQRMPQHVTFEESSYFAMQT 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01459 313 Gene3D - 70 144 - -
Cca11g01459 313 SMART sant 13 64 IPR001005 -
Cca11g01459 313 SMART sant 67 115 IPR001005 -
Cca11g01459 313 CDD SANT 16 62 IPR001005 -
Cca11g01459 313 CDD SANT 71 111 IPR001005 -
Cca11g01459 313 PANTHER TRANSCRIPTION FACTOR RAX3-LIKE 1 184 - -
Cca11g01459 313 PANTHER TRANSCRIPTION FACTOR RAX3-LIKE 208 300 - -
Cca11g01459 313 PANTHER OS09G0431300 PROTEIN 1 184 - -
Cca11g01459 313 PANTHER OS09G0431300 PROTEIN 208 300 - -
Cca11g01459 313 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Cca11g01459 313 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Cca11g01459 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Cca11g01459 313 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Cca11g01459 313 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Cca11g01459 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Cca11g01459 313 Gene3D - 7 68 - -
Cca11g01459 313 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01459 Cca-Chr11 36970911 36972406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01459 1 287 MYB Transcription Factor Family AT3G49690 48.553 1.49e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca11g01459 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01459 K09422 - gmx:100791406 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01563 06 30731155 30732975 Cca11g01459 11 36970911 36972406 PCT