Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01456 ATGAAGGGCATGGAAAATGATGACACTGTTGACGTTAATAATCAAAATAACTGGTTGGGGTTCTCACTCTCTCCTCAAATGAATATTGGAGTTTCTTCACATCACTCCCAACCTTCCTCTGCTGCTGAAGTGGTTCCTACAAGCTTTTACCACCATGCTCCACTTCATAACTATGGCTTCTACTATGGACTTGAAGCAGAAAATGTTGGATTGTATTCGGCCCTGCCTATCATGCCTCTCAAATCTGATGGCTCTCTCTATGGAATGGAAGCTCTGAGCAGGTCACAGGCACAAGCAATGGCTACTACTTCAACTCCAAAACTGGAGAATTTCTTAGGTGGGGAAGCGATGGGGACCCCTCACTATGAATGTAGTGCCACAGAAACAACCCCTCTGAGCTTAGACAGTGTGTTTTACAACCAACCATCACGCCGTGACCTAAACAACCCAACATACCAAAACCATGTCcaacaacacattagcaaccaacagcaacaacaaGAGCTTCAAGCTCAACACTTGTCATATTACTCTACCTTGAGAAACCATGATATGATGTTAGAAGGGTCCAAGCAAAACCAAACTTCAGATAGCAATCTTCATGTTTCAAACATGGGGGATGATGGAGTTCCTGTTCCTGGTCTCAAGAGCTGGACAGTTAGAAACTTCCAAGCTAGCCATGCACAGGACTCAAAGATGATTGTTCCTGTGGAAGAAAATGGAGGTGAATCAGGGTCCATGCAGGGATCAATGGCTTATGGGGATTTGCAGTCTTTAAGCTTGTCCATGAGTCCTAGCTCACAGTCTAGCTGTGTAACAAGTTCACACCGAACATCACCTGCTGTCATTGATTCTGTTGTTATGGATACAAAGAAAAGGGGACCTGAAAAGGTTGACCAGAAGCAAATTGTTCATAGGAAGTCCATTGACACCTTTGGACAAAGAACCTCCCAATATAGAGGTGTAACAAGGCATAGGTGGACTGGTAGATATGAAGCTCATCTTTGGGACAACAGCTGCAAGAAAGAGGGCCAAAGCAGGAAAGGAAGACAAGTTTATCTAGGGGGTTATGATATGGAAGAAAAAGCTGCGAGGGCTTATGATCTGGCCGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTCCCTTTGGAAAATTATCAAAATGAACTTGAAGAAATGAAGAACATGACCAGGCAGGAATATGTTGCTCATTTAAGAAGAAAAAGCAGCGGATTCTCAAGAGGGGCTTCCATGTACAGAGGAGTAACAAGACACCACCAACATGGAAGATGGCAAGCTCGAATTGGTAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCAGTACCCAAGAGGAAGCAGCTGAAGCCTACGACATTGCTGCTATAAAATTCAGAGGAGTGAATGCTGTGACCAACTTTGACATAACAAAATATGATGTGGAGAAAATCATGGCAAGCAGCAACCTTCTTAGCAGTGAACTAGCTAGACGCAACAGAGATACAGAAGGTGGAACTCAGTATATTGATCATAATCCTAAGCCTTCTGCATATGATGACACTCAAGAAGCTATTCTAATGCAGAAGAGCTGTGAGAGCCAAAATGATCAGTGGAAGATGGTTCTATACCAATCCTCTCAACAACTTGACCAGAATCCACCAAGAATTGAGAGTGACAGGGCCAACCACTCCTTCTCAGTGGCTATGGACAACATGTTTCATCAAGAAGTAGAGGAATCAAGCAAGGTGAGAACGCATGTGTCAAATCCTTCTTCATTGGCCACAAGCTTAAGCAGCTCAAGAGAAGGTAGCCCTGATAGGACAAGCTTGCCAATGCTCTCTGGAATGCCTTCAACTGCTTCCAAACTATTGGCTACTAATCCAAATAGTAACCTCAACGTGAATTCTTGGGACCCTTCACCCCATTTGAGGCCTGCTCTTTCCTTGCCTCAGATGCCAGTTTTTGCTGCTTGGACAGATGCGTAG 1995 0.4346 MKGMENDDTVDVNNQNNWLGFSLSPQMNIGVSSHHSQPSSAAEVVPTSFYHHAPLHNYGFYYGLEAENVGLYSALPIMPLKSDGSLYGMEALSRSQAQAMATTSTPKLENFLGGEAMGTPHYECSATETTPLSLDSVFYNQPSRRDLNNPTYQNHVQQHISNQQQQQELQAQHLSYYSTLRNHDMMLEGSKQNQTSDSNLHVSNMGDDGVPVPGLKSWTVRNFQASHAQDSKMIVPVEENGGESGSMQGSMAYGDLQSLSLSMSPSSQSSCVTSSHRTSPAVIDSVVMDTKKRGPEKVDQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITKYDVEKIMASSNLLSSELARRNRDTEGGTQYIDHNPKPSAYDDTQEAILMQKSCESQNDQWKMVLYQSSQQLDQNPPRIESDRANHSFSVAMDNMFHQEVEESSKVRTHVSNPSSLATSLSSSREGSPDRTSLPMLSGMPSTASKLLATNPNSNLNVNSWDPSPHLRPALSLPQMPVFAAWTDA 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01456 664 PRINTS Ethylene responsive element binding protein signature 319 330 IPR001471 GO:0003700|GO:0006355
Cca11g01456 664 PRINTS Ethylene responsive element binding protein signature 460 480 IPR001471 GO:0003700|GO:0006355
Cca11g01456 664 ProSiteProfiles AP2/ERF domain profile. 318 384 IPR001471 GO:0003700|GO:0006355
Cca11g01456 664 SUPERFAMILY DNA-binding domain 317 386 IPR016177 GO:0003677
Cca11g01456 664 MobiDBLite consensus disorder prediction 587 630 - -
Cca11g01456 664 SUPERFAMILY DNA-binding domain 419 479 IPR016177 GO:0003677
Cca11g01456 664 Gene3D AP2/ERF domain 420 480 IPR036955 GO:0003700|GO:0006355
Cca11g01456 664 Gene3D AP2/ERF domain 317 386 IPR036955 GO:0003700|GO:0006355
Cca11g01456 664 ProSiteProfiles AP2/ERF domain profile. 420 478 IPR001471 GO:0003700|GO:0006355
Cca11g01456 664 MobiDBLite consensus disorder prediction 580 630 - -
Cca11g01456 664 Coils Coil 385 405 - -
Cca11g01456 664 CDD AP2 419 480 IPR001471 GO:0003700|GO:0006355
Cca11g01456 664 SMART rav1_2 318 390 IPR001471 GO:0003700|GO:0006355
Cca11g01456 664 SMART rav1_2 420 484 IPR001471 GO:0003700|GO:0006355
Cca11g01456 664 CDD AP2 317 384 IPR001471 GO:0003700|GO:0006355
Cca11g01456 664 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 14 662 - -
Cca11g01456 664 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 14 662 - -
Cca11g01456 664 Pfam AP2 domain 421 470 IPR001471 GO:0003700|GO:0006355
Cca11g01456 664 Pfam AP2 domain 318 376 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01456 Cca-Chr11 36851092 36855896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01456 401 664 AP2-EREBP Transcription Factor Family AT4G37750 25.490 1.77e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Cca11g01456 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01456 K09285 - gmx:100787611 1086.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01560 06 30644373 30648029 Cca11g01456 11 36851092 36855896 PCT