Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01447 ATGCCAATGTTTCAGTCTCTTTGTAAGAGGGATGGGGTGGACGGCCAGATTCTAGATCTGGACACGGCGGTCAAAGATGGGGTTTTGGGTGGCGTCGATTCTGGGTTTGTGGGAACAACTGGGGTTGCTGAAAAATTGGATCTTGGGAGAATGATTGAAGAGTTGGACTTGTGTGATGTTCCCTCTGTGTTCATTTGTCCAATTTCTCTTGAGCCAATGCAGGACCCCGTGACCCTTTGCACGGGCCAGACCTATGAGAGGTCCAACATTCTCAAATGGTTCAGTTTAGGGCACCTAACTTGCCCCACTACAATGCAAGAGCTCTGGGACGACACCCTCACTCCAAACACCACCCTCTACCGTTTGATATTCACTTGGTTCTCTCAGAAATACCTTGTGATGAAGAAAAGATCAGAAGACGTGCAGGGGAGGGTGTTGGAGCTTGTTGAGACGCTCAAGAAGGTGAAGGGCCAAGCTCGTGTTCTCGCCCTCAAGGAGCTCCATCAAGTGGTCGCTGCTCATGCCACTGCCCGCAAGGCATTGCTTGATGGTGGTGGAGTCTCCGTGGTATCGTCCTTGCTTGGTCCTTTCACTTCATATGCTGTTGGCTCCGAGGTCATTGGTGTTCTTGGGAGTTTGAACCTCGATTGTGAGTCCAAGAGGAGTTTAGTGCAGCCTGCAAAGGTTTCACTGATGGTGGATATTTTGAATGAGGGTTCAATTGAGACAAAGATCAATTGCACTAGGCTGATTGAGACACTGATTGAAGGGAAGGATTTCGATTTGGAGATTTTTAGGAGCCATAGCCTTTTGGTTGGGTTGATGAGGCTTGTGAAGGACAAGAGGCACACAAATGGAATCTTCGCTGGACTGAAGCTCCTCAGAAAAGTTTGCTCGCATTCCGAAGTTAAGAGTTTGCTGGTGAGCATTGGGGCTGTTTCTCAATTGGTTGAGTTGTTGTCTGGTTTGGAGCTTGATTGTTTGGAATTGGCTCTTTCAATTTTGGATGCATTGGCATCTGTCCCTGAAGGCAGATTAGCTTTGAAAGACTGTTCTAATGCCATACCCATTATGGTGAAACTGTTGATGAGGGTCTCAGAGAATTACACTAAATATGCATTGTCAATACTATGGTCTGTGTGCAAGCTTGCACCTGAGGAGTTCTCTTTGATTGCTGTGGAAGCAGGACTTGCTGCCAAACTCCTCCTTTTGATTCAAAGCAATTGCAATCCTATGCTGAAACAACAGTCGGCTGAGCTTTTGAAGTTGTGTAGTTTGAATTATTCAGATACAATCTTCATTTCGAAGTGCAAGCTTACCAGAACCATCCAATGA 1335 0.4652 MPMFQSLCKRDGVDGQILDLDTAVKDGVLGGVDSGFVGTTGVAEKLDLGRMIEELDLCDVPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFSLGHLTCPTTMQELWDDTLTPNTTLYRLIFTWFSQKYLVMKKRSEDVQGRVLELVETLKKVKGQARVLALKELHQVVAAHATARKALLDGGGVSVVSSLLGPFTSYAVGSEVIGVLGSLNLDCESKRSLVQPAKVSLMVDILNEGSIETKINCTRLIETLIEGKDFDLEIFRSHSLLVGLMRLVKDKRHTNGIFAGLKLLRKVCSHSEVKSLLVSIGAVSQLVELLSGLELDCLELALSILDALASVPEGRLALKDCSNAIPIMVKLLMRVSENYTKYALSILWSVCKLAPEEFSLIAVEAGLAAKLLLLIQSNCNPMLKQQSAELLKLCSLNYSDTIFISKCKLTRTIQ 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01447 444 Gene3D - 143 423 IPR011989 -
Cca11g01447 444 SMART Ubox_2 63 126 IPR003613 GO:0004842|GO:0016567
Cca11g01447 444 SUPERFAMILY RING/U-box 54 130 - -
Cca11g01447 444 Pfam U-box domain 60 130 IPR003613 GO:0004842|GO:0016567
Cca11g01447 444 ProSiteProfiles U-box domain profile. 59 133 IPR003613 GO:0004842|GO:0016567
Cca11g01447 444 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 33 443 - -
Cca11g01447 444 SUPERFAMILY ARM repeat 230 430 IPR016024 -
Cca11g01447 444 Coils Coil 443 444 - -
Cca11g01447 444 PANTHER WDSAM1 PROTEIN 33 443 IPR045185 GO:0061630
Cca11g01447 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 135 IPR013083 -
Cca11g01447 444 CDD RING-Ubox_PUB 64 106 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01447 Cca-Chr11 36657023 36659463 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01447 1 444 U-box Gene Family AT3G49810 70.953 0.0 613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01447 - - gmx:100781741 719.924