Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01441 ATGAGAACCCACATGATGGAGGTGGAAAACGCGTGCGACATTGTGGAAATCGTGTCAGAGTTCGCAAGGAAGCGCCGGAGAAGGGTTTTTATCTTGAGTGGCACCAAAACTGTCACCAATGTCACTCTCGAACAACCGGCTTCTCTTGTCTTCAAAATCATCCCATTTCTCTTGGTTCCTTTAAAGTATCACCTCTTGGATTCCTTGGCCTTGGCATATTTCCATGATCGGTTCTATCGTTACCTCCCACAGAAGGGTCAAGTGGTGGGAGGAAGCGTGGTTGGACTACTGGTTGCTTCGGAGCCTGTGGTGATCATGGATGCTTCGTTCAACAACACTACTTATGAAAGGCTTCTTTGGAGGATGAAGACCCTTAATGCAAGGAGGTTCAATTGGGTCACCCGGTGCAAGTGTGGTGTTGCTCAATCATTACTTATGAGAGGAGGTAATTCAACTACTCCACTTTTCCATGGTTTGCCTCCTAATCTTTCTAAATTTTGTTCAAATGTCATATGA 516 0.4554 MRTHMMEVENACDIVEIVSEFARKRRRRVFILSGTKTVTNVTLEQPASLVFKIIPFLLVPLKYHLLDSLALAYFHDRFYRYLPQKGQVVGGSVVGLLVASEPVVIMDASFNNTTYERLLWRMKTLNARRFNWVTRCKCGVAQSLLMRGGNSTTPLFHGLPPNLSKFCSNVI 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01441 171 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 1 48 - -
Cca11g01441 171 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 84 163 - -
Cca11g01441 171 SUPERFAMILY AF0104/ALDC/Ptd012-like 1 47 - -
Cca11g01441 171 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 48 IPR014476 GO:0003680
Cca11g01441 171 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 84 163 IPR014476 GO:0003680
Cca11g01441 171 ProSiteProfiles PPC domain profile profile. 1 131 IPR005175 -
Cca11g01441 171 Pfam Plants and Prokaryotes Conserved (PCC) domain 2 111 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01441 Cca-Chr11 36548682 36553697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01441 2 115 AT-hook Motif Nuclear Localized (AHL) Family AT3G60870 43.478 3.59e-23 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01441 - - gmx:100807581 118.627