Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01437 ATGTCTATCGACTCCTCGAACCACCCAACTCCTGACTTGTACTGCAGTGAAGTAACTAGCGAGGTGATTCACTTGGATTCCGATGAGTCTCTGAAGTTTCATTTTCTATGGGAAGACTCTGATTCTGATAGTGAAGGAAGTTGTCTATTGAGCTTATTAGAATCTGAACATGATCAAGTACCGGAACAAAGAAAGTCACTAAGACAACTTCGCAAAAAAACGTGGCTGATTAATGCTCGAGAAGAGGCCATACATTGGATCCTAAAGGTGCATTCTTACTACAATTTTAGACCCGAGACAGCATATCTTTCTGTAAATTACCTCGATCGTTTTCTTTTGTCACACTCCTTGACGGAAGATTCAGCATGGCCTATGCAGCTGTTGTCAGTTGCTTGTCTTTCACTTGCAGCAAAAATGGAAGAAACCAAAGTGCCACTTCTTTTGGACCTTCAGGTGATCGAGTCCAAGTTTCTTTTTAAGCCCAAAACAGTTCAGAGGATGGAGCTTTTGGTTATGGCCAGTCTCAAGTGGAGATTGCGTACTATAACCCCTTTTGATTTTATCCACCTTTTCATTGCCAAGCTTTCATGCTCTGCTTCCAGATGGCGAGATTTAAGTTACATTGTTTCTCGTGTCTCAGATGTTATTATCAGAACATGTCTAGTCATGGATTTCTCGGAGTTTTCACCATCCACAATAGCAGCAGCTGCACTGTTATGGGTAACCAACCAACGTATAGATGACAAGAAACCGGATTGCTTCCACAAGCATATAAGCATTGAGATGGTGCATACATGTTACAAACTAATGAAGCAGAAACTGATCATTCGCCGATCAGAATTTTTTTGGTCAAAGACTTCACAATTATTGCCCCGAAGTCCCACCTGTGTGCTTGATCATGCAGCTATGCAAGAAAGCAGCGATGCTCTCAAGCCCTGA 939 0.4207 MSIDSSNHPTPDLYCSEVTSEVIHLDSDESLKFHFLWEDSDSDSEGSCLLSLLESEHDQVPEQRKSLRQLRKKTWLINAREEAIHWILKVHSYYNFRPETAYLSVNYLDRFLLSHSLTEDSAWPMQLLSVACLSLAAKMEETKVPLLLDLQVIESKFLFKPKTVQRMELLVMASLKWRLRTITPFDFIHLFIAKLSCSASRWRDLSYIVSRVSDVIIRTCLVMDFSEFSPSTIAAAALLWVTNQRIDDKKPDCFHKHISIEMVHTCYKLMKQKLIIRRSEFFWSKTSQLLPRSPTCVLDHAAMQESSDALKP 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01437 312 SMART Cyclin_C_2 182 307 IPR004367 -
Cca11g01437 312 CDD CYCLIN 80 172 IPR013763 -
Cca11g01437 312 Pfam Cyclin, N-terminal domain 52 179 IPR006671 -
Cca11g01437 312 ProSitePatterns Cyclins signature. 80 111 IPR006671 -
Cca11g01437 312 PANTHER CYCLINS 2 304 IPR039361 -
Cca11g01437 312 Pfam Cyclin, C-terminal domain 182 274 IPR004367 -
Cca11g01437 312 PANTHER CYCLIN-D1-1-LIKE ISOFORM X1 2 304 - -
Cca11g01437 312 SMART cyclin_7 85 173 IPR013763 -
Cca11g01437 312 Gene3D - 62 180 - -
Cca11g01437 312 SUPERFAMILY Cyclin-like 48 179 IPR036915 -
Cca11g01437 312 SUPERFAMILY Cyclin-like 164 278 IPR036915 -
Cca11g01437 312 Gene3D - 51 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01437 Cca-Chr11 36496616 36498452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01437 1 275 Core Cell Cycle Gene Families AT1G70210 41.696 6.26e-63 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01437 K18810 - gmx:100799323 490.345