Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01429 ATGGCCTTGAGTATGGTAGTTCGACATGATGAAGTTCTTGATACTAAGCCCTTGGCAGTATCTGGTGGACCATTGCAATCTCCTAATGTGAAAGAACAAATATCAAGGTTGGTGGATAATCACATATTAGAGGCTATTGTCAACATGAAGGAGCAAAAGGGTTCTGACAAGGCTGCCATTATTTCTTACATAGAGGAAAAGTATCGGTCTCCACCAAATCTCAGTAAATTACTGTCAACCAAACTGAAGCATATGGTGGCAAGTGGAAAAATAATCAAGGAAAAGCACAAGTACAGGATTGCTCCAAGTTCAACAGTCTCTGAGAAAAGAAGAGGCTCTTCATCGATACTTTTGGAAGGGAGGCCCAAAGATCCTCCAGGAGCATATAAGAATGATGATGTCAACATCCTATCAAAATCCCAAATTGATGCAGAGATATCAAAAGTGAAGGGCATGACAGCTCAAGAGgcagctgctgtggctgcaaaagcagttgcagaggcagaagctgcaattgcacaggctgaggcagcagctagagaggcagaggctgcagaagctgaagctgatgcagcCAAAGTGTTTGCGAAGGCAGCAATGAAGGTGCTAAAATGCAAAATGCTTCATATTTGA 633 0.3365 MALSMVVRHDEVLDTKPLAVSGGPLQSPNVKEQISRLVDNHILEAIVNMKEQKGSDKAAIISYIEEKYRSPPNLSKLLSTKLKHMVASGKIIKEKHKYRIAPSSTVSEKRRGSSSILLEGRPKDPPGAYKNDDVNILSKSQIDAEISKVKGMTAQEAAAVAAKAVAEAEAAIAQAEAAAREAEAAEAEADAAKVFAKAAMKVLKCKMLHI 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01429 210 Coils Coil 158 192 - -
Cca11g01429 210 PANTHER MYB TRANSCRIPTION FACTOR 1 210 - -
Cca11g01429 210 SUPERFAMILY "Winged helix" DNA-binding domain 39 111 IPR036390 -
Cca11g01429 210 Gene3D - 30 112 IPR036388 -
Cca11g01429 210 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 33 102 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cca11g01429 210 SMART h15plus2 19 97 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cca11g01429 210 MobiDBLite consensus disorder prediction 102 132 - -
Cca11g01429 210 PANTHER SINGLE MYB HISTONE 4 1 210 IPR044597 GO:0003691
Cca11g01429 210 Pfam linker histone H1 and H5 family 41 95 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01429 Cca-Chr11 36397783 36403530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01429 38 207 Single Myb Histone (SMH) Gene Family AT5G67580 47.647 6.38e-30 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01429 K09422 - gmx:100779583 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01546 06 30498937 30502053 Cca11g01429 11 36397783 36403530 PCT