Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01425 ATGGATACCTTGTTTAGACTCGTAAGCTTCCATCAGCAGCAGCAACAACAACAACCGGATCCATCCCTGAACTCCACGACCAGCAGAACATCTAGCAGCTCTAGATCCTCCCGCCAAAACTACTACCACTACTCCCACCAAGAAGACGAAGAATGCTTCAACTTTTACATGGATGATGAAGACTTATCCTCCTCTTCCTCCAaacactattaccaataccaaccccacgtttccacaaacaccaccaacaccaacaccaccaccttcagcaacaccaCTGATTACTCCTACTCCTTCTCCCCCACCCCACCTATACCCGACTTCAACTTCGAATTCTCCCCCAACTGGTCTCACAACCTCTTATTGGAAACCGCACGCGCCGTCGCCGAAAACAACCGCACGCGCCTCCATCACCTCCTCTGGATGCTCAATGAGCTCAGCTCCCCCTACGGCGACACCGACCAAAAGCTCGTCGCCTATTTCCTCCAAGCCCTCTTCAGCCGCGTCACCGACGACGGCGACCGAACCTACCGAACCCTAGCCTCGGCGTCGGAGAAAACATGCTCCTTCGAATCCACCAGAAAAACGGTGCTCAAGTTCCAAGAAGTAAGCCCCTGGACAACGTTCGGACACGTGGCGTCCAACGGCGCCATCCTCGAAGCCCTAGAGGGAAACCCCAAATTGCACATTCTCGACATCAGCAACACCTATTGCACGCAATGGCCAACGCTTCTGGAAGCGCTCGCCACGCGAACCGACGAAACGCCGCACCTTAGGTTAACCACCGTCGTCTCGGGAAGACCCAACAACTCCGTCCACCGCGTCATGAAGGAAATCGGAGCTAGGATGGAGAAATTCGCCAGGCTCATGGGAGTGCCGTTTAAGTTCAACGTCGTCCACCACGCCGGCGATCTCTCTGACCTCAATTTCTCCGAGCTCAACATCAAACACGACGAGGCCTTGGCCGTGAACTGCGTGAACGCGCTGCATTCGGTTTCCGCGGCGGGGAACAACCGCGACACGTTGATATCCTCGCTGCAAGCGTTGCAGCCGAGAATTATAACCGTGGTGGAGGAGGAAGCCGATTTGGACGTTGGAATCGACGGTTACGAGTTCGTTAAAGGGTTCGAAGAGTGCTTCAGGTGGTTTAGGGTTTACTTCGAGGCTCTGGACGAGAGCTTCGTGAAGACGAGCAACGAGAGGCTGATGCTGGAGCGCGCCGCGGGGAGGGCGGTGGTGGACCTCGTGGCATGTTCGCCGGCGGAGTCCGTGGAGCGGCGGGAGACGGCGGCGCGGTGGAGCGCGCGTCTGCATGGCGGAGGGCTGAACGCGGTGGCGTTCAGCGAGGAGGTTTGCGACGACGTGAGGGCGCTGTTGCGGAGGTACAAGGAGGGGTGGTCGATGGCGCAGTGCTCCGACGCCGGAATATTCCTCTCGTGGAAAGACACGCCGGTGGTGTGGGCCAGTGCATGGAGGCCCTAA 1482 0.5479 MDTLFRLVSFHQQQQQQQPDPSLNSTTSRTSSSSRSSRQNYYHYSHQEDEECFNFYMDDEDLSSSSSKHYYQYQPHVSTNTTNTNTTTFSNTTDYSYSFSPTPPIPDFNFEFSPNWSHNLLLETARAVAENNRTRLHHLLWMLNELSSPYGDTDQKLVAYFLQALFSRVTDDGDRTYRTLASASEKTCSFESTRKTVLKFQEVSPWTTFGHVASNGAILEALEGNPKLHILDISNTYCTQWPTLLEALATRTDETPHLRLTTVVSGRPNNSVHRVMKEIGARMEKFARLMGVPFKFNVVHHAGDLSDLNFSELNIKHDEALAVNCVNALHSVSAAGNNRDTLISSLQALQPRIITVVEEEADLDVGIDGYEFVKGFEECFRWFRVYFEALDESFVKTSNERLMLERAAGRAVVDLVACSPAESVERRETAARWSARLHGGGLNAVAFSEEVCDDVRALLRRYKEGWSMAQCSDAGIFLSWKDTPVVWASAWRP 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01425 493 Pfam GRAS domain family 119 492 IPR005202 -
Cca11g01425 493 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 492 IPR005202 -
Cca11g01425 493 ProSiteProfiles GRAS family profile. 108 492 IPR005202 -
Cca11g01425 493 MobiDBLite consensus disorder prediction 8 41 - -
Cca11g01425 493 PANTHER PROTEIN SHORT-ROOT 1 492 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01425 Cca-Chr11 36363256 36365212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01425 1 493 GRAS Transcription Factor Family AT4G37650 57.885 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca11g01425 GRAS 1e-103 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01425 - - gmx:100778524 828.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01541 06 30456268 30458267 Cca11g01425 11 36363256 36365212 PCT