Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01418 ATGAAAACTTCTCACTATTTCATTCTCCTTTTCATCCTATCATCACTCTCTCTATTCACCGCTAACTCTAAGCCTTGCAATCAAACAAGAAGAATCCTCCACCAGCCATTGTTCCCGGAGGTCTCTGCTCCGCCGCCCACCACCCCGCCGCCCGACATTCCCTCTTCTCCCGACATTCCCTTCTTTAATGAGTACCCAACTGGGCAGCCCCCGCCGGTGCAGAATCTCCCGCCGGCGACAACCTCCAGCGGCGTGATCGCCAACCCGACGGCCACGCAGCCGACGAAGCCGGCGAAGAAGGTGGCGATTGCGATCTCCGTGGGAATTGTGACGCTGGGAATGTTCTCTGCATTGGGATTCTTCTTATACAGGCACAGAACGCACCACCCCGCGGAGACTCAGAAACTCGTTTctcggactcggactcggactcggactcAGAGAGTTCTAGAAGATTCTCCGCGGGCCCCACCACCTTCCACCTTCCTCTACATTGGGACCGTTGAGCCCGCTAGAACTTCGCTCAGCGAGCCCAACGGAAGCCACTCTCCGGCGGCGGAATTCTCCGACTCCTCCTCTTCCGAGGAGGAAAGCTGCGAGACGGCGTTTCACTCGCCGCACGGATCCTCACTCGGCCGCGAAGAGAATTTCTTCACGCCGGTTTCGCGCCACAGTTCTCTGGCCAACGGCAGCCCCGCCGCGGCTCCGGTGGTTCCTTTCTCGAAAAGAACTTCGCCGAAATCTAGGTTTTCTGCTCCCTCGCCGGATATCAGAAACTTGACCGTGCCTTCCGTTAAGCATTCTCCGGCGCCGGTCAAATATCAGCACGTGGAGAAAGAAGTGAGTTCAGGTCCTTTTAGAAGGCCGAAATTCTCATCGCCTCCTCCAGCACTGAATTTGACTCATCTTCATTCAAACGACTCCACCACATTACTTAAGcctcctcctcctcctccgcctccgccgcctccgccgcgttggtctccgTCAGTTAGTGTTTCTTCGTCCTCTAAGCACCAAAAATCTCGGTCTCTAAATGAAGGAGGGGCTTCTGCTAACGTTGTTAGTTTAAGGAAAGGTTCATCAGAGGAAATTGACCAAAGGCATGCGGGTGATGACGTGGATGGAGCGAAACCTAAGTTGAAGGCTCTGCATTGGGATAAAGTGTGTGCTACTTCGGACCGTGCCACTGTGTGGGACCAGTTAAAATCTAGTTCCTTTCAGTTAAATGAGGACATGATGGAGACCCTGTTTGGCTGCAATTCTTATTCCACAAGTTCTGCTTTTAAAGAGACTGTTACTAGAAAGTCGGTTCTTCCTCCTGTTGAACCGGAGAATAGGGTCTTAGACCCCAAAAAATCCCAAAACATAGCTATACTACTCAGGGCACTCAATGTCACAAGAGATGAGGTCTGCGAAGCTCTTTTAGATGGAAACCCTGAAGGTTTGGGAACCGAGCTATTGGAGACTCTAGTAAAGATGGCTCTAACAAAGGAGGAAGAAATAAAACTCAAAAATTATGATGGTGATCTCGCAAGACTTGGGTCTGCAGAAAGATTTCTTAAAGCAGTGCTTGATATCCCTTTAGCTTTTAAAAGAATTGAAGCCATGCTGTACAGAGCTAATTTTGAAACTGAAGTTAACTACCTTAGGAAGTCCTTTCAGAACTTGGAGGCAGCAAGTGAGGAATTAAAAAACAGTCGGTTATTCTTCAAACTTCTTGAAGCTGTTCTAAGGACAGGAAACAGAATGAATGTAGGCACCAATCGTGGTGATGCTAAATCTTTCAAACTGGACACACTTCTAAAACTTGTAGATATAAAGGGCACAGATGGAAAAACAACACTGCTCCATTTTGTGGTCCAAGAGATCATTAGATCTGAAGGAACAGGTGGTGAATCTGCTAATGAGAATGTTCAAAATCAAACAACTTCCCAATTCAATGAGGATGAGTTCAAAAAGAAAGGATTGCAGGTTGTGGCCGGACTGAGTAGAGACCTTGGAAATGTCAAAAAGGCAGCGGGAATGGACTCGGATGTTTTAAGCAGTTATGTCTCAAAGCTTGAAATGGGACTTGATAAAGTGAGATTAGTTTTGCAGTGTAAAAAGCCAGATATGCATGGGAATTTCTTCAACACAACTGGGCTATTTCTGAAAGATGCTGAAGAGGAAATTGTTAAGATCAAAGCTGATGAGAGAAAGGCCTTATTCCTTGTGAAAGAAGTTACAAAATACTTTCATGGGGATGCAGCAAAGGAAGAAGCACACCCTTTAAGAATTTTTATGATTGTAAGAGACTTTCTAAATATTTTGGATCAAGTCTGCAAAGAAGTGGGAAGGATGCAGGATAGAACTGTAATTGGTTCAGCTAGGTCCTTCAGGATAGCCGCAAGTGCATCATTACCTGTACTCAGCAGGTACCATGCAAGACAAGATAGAAGTTCAGACGAGGAAAGTTTATCCCCCTAG 2469 0.4524 MKTSHYFILLFILSSLSLFTANSKPCNQTRRILHQPLFPEVSAPPPTTPPPDIPSSPDIPFFNEYPTGQPPPVQNLPPATTSSGVIANPTATQPTKPAKKVAIAISVGIVTLGMFSALGFFLYRHRTHHPAETQKLVSRTRTRTRTQRVLEDSPRAPPPSTFLYIGTVEPARTSLSEPNGSHSPAAEFSDSSSSEEESCETAFHSPHGSSLGREENFFTPVSRHSSLANGSPAAAPVVPFSKRTSPKSRFSAPSPDIRNLTVPSVKHSPAPVKYQHVEKEVSSGPFRRPKFSSPPPALNLTHLHSNDSTTLLKPPPPPPPPPPPPRWSPSVSVSSSSKHQKSRSLNEGGASANVVSLRKGSSEEIDQRHAGDDVDGAKPKLKALHWDKVCATSDRATVWDQLKSSSFQLNEDMMETLFGCNSYSTSSAFKETVTRKSVLPPVEPENRVLDPKKSQNIAILLRALNVTRDEVCEALLDGNPEGLGTELLETLVKMALTKEEEIKLKNYDGDLARLGSAERFLKAVLDIPLAFKRIEAMLYRANFETEVNYLRKSFQNLEAASEELKNSRLFFKLLEAVLRTGNRMNVGTNRGDAKSFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRSEGTGGESANENVQNQTTSQFNEDEFKKKGLQVVAGLSRDLGNVKKAAGMDSDVLSSYVSKLEMGLDKVRLVLQCKKPDMHGNFFNTTGLFLKDAEEEIVKIKADERKALFLVKEVTKYFHGDAAKEEAHPLRIFMIVRDFLNILDQVCKEVGRMQDRTVIGSARSFRIAASASLPVLSRYHARQDRSSDEESLSP 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01418 822 MobiDBLite consensus disorder prediction 39 57 - -
Cca11g01418 822 MobiDBLite consensus disorder prediction 172 205 - -
Cca11g01418 822 ProSiteProfiles Formin homology-2 (FH2) domain profile. 371 797 IPR015425 -
Cca11g01418 822 MobiDBLite consensus disorder prediction 132 377 - -
Cca11g01418 822 MobiDBLite consensus disorder prediction 361 377 - -
Cca11g01418 822 MobiDBLite consensus disorder prediction 38 65 - -
Cca11g01418 822 PANTHER FORMIN-LIKE PROTEIN 8 172 - -
Cca11g01418 822 SMART it6_source 371 786 IPR015425 -
Cca11g01418 822 PANTHER FORMIN-LIKE PROTEIN 177 822 - -
Cca11g01418 822 Gene3D Formin, FH2 domain 381 794 IPR042201 -
Cca11g01418 822 MobiDBLite consensus disorder prediction 215 229 - -
Cca11g01418 822 SUPERFAMILY Formin homology 2 domain (FH2 domain) 315 783 - -
Cca11g01418 822 Pfam Formin Homology 2 Domain 376 771 IPR015425 -
Cca11g01418 822 MobiDBLite consensus disorder prediction 330 360 - -
Cca11g01418 822 MobiDBLite consensus disorder prediction 244 258 - -
Cca11g01418 822 PANTHER FORMIN-RELATED 8 172 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cca11g01418 822 MobiDBLite consensus disorder prediction 311 329 - -
Cca11g01418 822 MobiDBLite consensus disorder prediction 132 150 - -
Cca11g01418 822 PANTHER FORMIN-RELATED 177 822 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01418 Cca-Chr11 36291969 36296108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01418 378 802 FH2 protein (formin) Gene Family AT3G25500 61.628 4.78e-171 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01418 - - gmx:100803578 1199.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01531 06 30359229 30364166 Cca11g01418 11 36291969 36296108 PCT