Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01413 ATGGCTTGTGCGATGGTTGTGAATGTGAGAGAGTTCGACCCAAGTAAAGACAGAGAGAGTGTGGAAGCCGTTGAGAGAATATGTGAGGTTGGACTCAGTGGAAAGGTTTCCCTCTTCACGGACCTCCAGGGTGACCCAATTTGCAGGGTCCGCAATTCACCTACTTTCCTCATGCTGGTAGCCCAAATTGGGCAAGAGACTGTAGGAATGATAAGAGGGTGCATCAAAACCGTTACATGCGGAAAGAAGCGAAACAAGCTGCCCATATACACCAAACTCGCTTACATACTAGGCCTCCGTGTGTCTCCAAACCACAGGAGAATGGGCATAGGGCTGAAGCTGGTGCAGAGAATGGAGGAGTGGTTCAGAGGCAATGGAGCGGAGTACGCCTACATGGCAACGGAAAAGGACAATGTCGCATCCGTTAAGCTCTTCACCCACAAATGCGGCTACAACAAGTTCCGTACCCCCTGCATCCTCATCAACCCCGTTTACGCTCACCCACTCAAGACCTTCTCCAACAAAATCACCATAATCCCACTCGCCCCACACGACGCCGAGTTTCTCTACCGCAACAAATTCGCCACCACTGAGTTTTTCCCGCGCGACGTCGACGCCGTTCTCACCAACCACCTCACTCTCGGAACCTTCCTGGCCGTTCCGCGCGCCTCTTTCTGGGCTGACACGTGGCCCGGCTCGGCCCGCTTTCTGGCGGACCCACCTTCCTCCTGGGCCCTCCTCAGCGTCTGGAACTGCAAGGACGTGTTCACGCTCCAGGTGAAAGGCGCTTCGCGCGTGAAGAAGACGCTCGCCAAGACCACTCGCCTCCTCGACAAGGCCTTGCCCTGGCTGCGTCTGCCTTCTATTCCGAATTTCTTTAAGCCCTTTGGGTTTCACTTTTTATACGGGCTTGGAGGGGAGGGCCCGGAGGCCCACAAGATGGTGCGGGCTTTGTGCGCCTTCGCGCACAACCTCGCCAAGGACCGTGGCTGCCAGGTTGTGGCCACTGAGGGTTCGAGCCGCGAACCCCTACGCTGCGCCATCCCGCACTGGAAGAGGTTCTCCTGCGACGAGGATTTGTGGTGCATCAAGAGACTCGGGGAAGATTACAGCGATGGCTCCCTTGGTGATTGGACCAAATCTCCTCCTGGATTCTCAATTTTCGTTGATCCTAGAGAGGTTTAA 1185 0.5553 MACAMVVNVREFDPSKDRESVEAVERICEVGLSGKVSLFTDLQGDPICRVRNSPTFLMLVAQIGQETVGMIRGCIKTVTCGKKRNKLPIYTKLAYILGLRVSPNHRRMGIGLKLVQRMEEWFRGNGAEYAYMATEKDNVASVKLFTHKCGYNKFRTPCILINPVYAHPLKTFSNKITIIPLAPHDAEFLYRNKFATTEFFPRDVDAVLTNHLTLGTFLAVPRASFWADTWPGSARFLADPPSSWALLSVWNCKDVFTLQVKGASRVKKTLAKTTRLLDKALPWLRLPSIPNFFKPFGFHFLYGLGGEGPEAHKMVRALCAFAHNLAKDRGCQVVATEGSSREPLRCAIPHWKRFSCDEDLWCIKRLGEDYSDGSLGDWTKSPPGFSIFVDPREV 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01413 394 PANTHER N-ACETYLTRANSFERASE HLS1-LIKE-RELATED 5 393 - -
Cca11g01413 394 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 7 170 IPR000182 GO:0016407
Cca11g01413 394 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 48 153 IPR016181 -
Cca11g01413 394 Gene3D - 37 158 - -
Cca11g01413 394 Pfam Acetyltransferase (GNAT) family 57 151 IPR000182 GO:0016407
Cca11g01413 394 PANTHER N-ACETYLTRANSFERASE 5 393 - -
Cca11g01413 394 CDD NAT_SF 58 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01413 Cca-Chr11 36216011 36217487 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Cca11g01413 Acetyltransf_1 2.5e-17 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01413 - - gmx:100804109 674.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01527 06 30286709 30288665 Cca11g01413 11 36216011 36217487 PCT