Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01411 ATGGCCCTAAGGCCCTTCCATCTCAAATTGTCGCGCGATAGATtcttctttctcttccgctcttctctttccccttcatttccctctcctctccgccctctcAATTTCCCCCAAACCTTTCCACCCTCTTTTTCTTTCCGTCACTTcgccgccgctcccctcgcacgacctccgccgccgccactcgacgccATGGCACAGAAAATCGGAAAGTCCACCCGCCGCCCCGGCGCTTCCTCCAAGGCCAGGGTTTATGCCGACGTTAACGTCGTTCGCCCCAAGGAATATTGGGATTACGAGTCCCTCAACGTCCAGTGGGGGGAGCAAGATGACTATGAGGTGGTGAGGAAGGTTGGTAGGGGGAAATACAGTGAAGTGTTCGAAGGTGTTCACTGCACTGATGGTGAGAAATGCATCATCAAGATCCTGAAACCCGTCAAGAAGAAGAAGATCAAGAGGGAAATCAAAATATTACAAAATCTTTGTGGAGGACCTAATATTGTGAAGTTGCTTGACATTGTTAGAGATCAGCAGTCAAAGACCCCAAGTCTTATATTTGAATATGTCAACAACACTGATTTTAAAGTGCTCTATCCTACGTTATCAGACTATGATATACGATATTATATTTATGAACTTCTGAAGGCACTAGATTATTGCCATTCACAAGGAATCATGCACCGGGATGTAAAACCGCATAATGTAATGATTGACCATGAGCAGCGTAAGCTTCGCCTTATAGATTGGGGACTTGCAGAGTTCTATCATCCTGGGAAAGAATATAATGTTCGTGTAGCTTCAAGATATTTCAAAGGTCCTGAGCTTCTCGTGGATCTTCAAGACTATGATTACTCTCTAGATTTATGGAGTCTTGGTTGTATGTTTGCTGGGATGATATTCCGTAAGGAGCCATTCTTTTATGGACACGATAACTATGATCAACTGGTCAAAATAGCTAAGGTACTTGGGACAGATGAATTAAGTGCATATTTGGATAAGTATCGAATAGAGTTGGATCCGCATCTAGCAGCACTCATTGGGAGGCATAGCCGTAAACCATGGGCAAAGTTCATTAATGTTGAAAATCATCACTTGGCTGTTCCTGAGGCTGTTGACTTTGTTGACAAGTTACTACGCTATGATCACCAAGAACGTCCTACTGCAAAAGAAGCCATGAGCCATCCATATTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGTACACATTGA 1236 0.3892 MALRPFHLKLSRDRFFFLFRSSLSPSFPSPLRPLNFPQTFPPSFSFRHFAAAPLARPPPPPLDAMAQKIGKSTRRPGASSKARVYADVNVVRPKEYWDYESLNVQWGEQDDYEVVRKVGRGKYSEVFEGVHCTDGEKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPTLSDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIAKVLGTDELSAYLDKYRIELDPHLAALIGRHSRKPWAKFINVENHHLAVPEAVDFVDKLLRYDHQERPTAKEAMSHPYFNPVRNAESSRTRTH 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01411 411 Gene3D Phosphorylase Kinase; domain 1 112 188 - -
Cca11g01411 411 ProSiteProfiles Protein kinase domain profile. 112 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01411 411 ProSitePatterns Protein kinases ATP-binding region signature. 118 141 IPR017441 GO:0005524
Cca11g01411 411 SUPERFAMILY Protein kinase-like (PK-like) 84 401 IPR011009 -
Cca11g01411 411 SMART serkin_6 112 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01411 411 Gene3D Transferase(Phosphotransferase) domain 1 189 397 - -
Cca11g01411 411 Pfam Protein kinase domain 112 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01411 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Cca11g01411 411 MobiDBLite consensus disorder prediction 391 411 - -
Cca11g01411 411 PANTHER BNAA04G13490D PROTEIN 47 403 - -
Cca11g01411 411 CDD STKc_CK2_alpha 93 397 IPR045216 GO:0004674|GO:0006468
Cca11g01411 411 PANTHER CASEIN KINASE II SUBUNIT ALPHA 47 403 IPR045216 GO:0004674|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01411 Cca-Chr11 36169908 36183352 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01411 110 405 Core Cell Cycle Gene Families AT1G20930 29.206 2.52e-41 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Cca11g01411 Pkinase 2.4e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01411 K03097 - gmx:100776388 720.694