Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01409 ATGAGTTGCAACGGCTGCCGCGTCCTTCGAAAGGGTTGCAGCGACTCTTGCGTCTTGCGCACTTGTTTGCAGTGGATCCAAACCGCCGAGGCTCAGGGCCACGCCACTGTTTTTGTAGCTAAATTCTTTGGTCGTGCTGGACTCATGTCCTTCATTTCCAACGTTCCACAAAATCAAAGACCCGCTCTCTTTCAGTCTCTACTGTTTGAAGCGTGCGGGAGAACGGTCAATCCCGTCAACGGCGCCGTCGGCCTTCTCTGGACCGGCAACTGGCACGTCTGTCAGGCCGCCGTCGAGACCGTGCTCCGCGGCGGCGCGCTCCGGCCCATGCCCGACCTTATGGCTCTCCACGCTCCGGCTCTCGATGAGACATCCGAAGCGGAAGTTGGTTGCACCGACATTTGGAGGATCTCAGACACGAGTCCCAACCCCAACCCGAGCTCCTGCTTCACCAGGTCGCGTTCTCACGGCAAGGTCTCATCATCCGGCGGCGGAAAACGCCAGCGCTCGGAGGCTCAAGCGGCGCCGAATCTCGATCTCCGTCTGACGCCGGCTTTTCTGCAGAAGGTCGAGAGCCGCCGCTCTGGGTCACCCTCGATGACGTCGGAGGAGTCCGGCACGACGACGGCTTGTTTGGAGAGCGGATTTGGGGGTGACGGCGGAGACCGGAAAGTTCTCAATCTTTTTATTTGA 693 0.596 MSCNGCRVLRKGCSDSCVLRTCLQWIQTAEAQGHATVFVAKFFGRAGLMSFISNVPQNQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGALRPMPDLMALHAPALDETSEAEVGCTDIWRISDTSPNPNPSSCFTRSRSHGKVSSSGGGKRQRSEAQAAPNLDLRLTPAFLQKVESRRSGSPSMTSEESGTTTACLESGFGGDGGDRKVLNLFI 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01409 230 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 230 - -
Cca11g01409 230 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Cca11g01409 230 MobiDBLite consensus disorder prediction 136 168 - -
Cca11g01409 230 MobiDBLite consensus disorder prediction 136 216 - -
Cca11g01409 230 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 230 - -
Cca11g01409 230 MobiDBLite consensus disorder prediction 190 212 - -
Cca11g01409 230 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01409 Cca-Chr11 36076420 36077853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01409 1 230 AS2 family AT4G37540 55.906 2.56e-83 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca11g01409 LOB 8.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01409 - - gmx:100816480 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01409 11 36076420 36077853 Cca06g01525 06 30230414 30232241 PCT