Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01408 ATGCCTCCAAAATCCAACACGAGCAGTGCTCCTACGGCTACAGAATTCTCCCTAACTCTACTGCCAATTTTCACCCACACTTGGATCGCTTCCCAATGGCAAAGTTTCTCCATCAACTTTCCTCTCTCCCTTTATTTCTCCCCCAATATCTCTCCCTCAGACACGCACACACTGTCCATGACGCAATTCACACCTTCTTTCCACCAAATCGCACCCATCCCAAACCCTACCATGAACAAGAACCAAATTCCTAGGACTAGGCCATGGCCTGCAGGGTTCCCTACCTCCAAGGCTTTAACCAACTTCGGTGACGCCAACTGCATGGAACAGTTACTCATTCACTGCGCCAACGCCATCGAGACCAACGACGTAACCCTCGCGCAACAGATCCTATGGGTCCTAAACAACATAGCACCCCCTGACGGCGACTCCAACCAACGCCTCGCCTCCAGCTTCCTCCGCGCCCTCACCGCCCGCGCCGCCAAAACTGGCACCTGCAACATGCTCGTCGCCGTAGCCGCCGCGGACACACACAATAACGACGACCTCACCATGGACACGCACAAATTCTCCGTCATCGAGCTCGCCAACTTCGTCGACCTAACCCCCTGGCACCGCTTCGGCTTCACCGCCGCCAACGCCGCCGTTCTCGAAGCCACCGAGGGATTCTCCGTCATCCACATCGTCGACTTGAGCTTAACGCATTGCATGCAGATTCCCACGCTCATCGACGCCGTCGCTAGCCGCCACGACGTGCCGCCGCTGATCAAACTCACCGTCGCCGACGCTAGCTTCAGGGACATCCCTCCCATGCTGGACCTCTCCTACGACGAACTGGGCGCCAAGTTGGTCAATTTCGCTAGGTCCAGAAACGTGGTCATGGAATTCAGAGTGGTTTCTTCCAGTTACCAAGACGGGTTCGCGGGTTTGATTGAACACTTACGAGTGCAACAGCAGCACTTGCTTTATACTGGGGAACCTCGTCCAAGTGAAGCTTTGGTCATTAACTGTCACATGATGCTTCATTACATCCCTGACGAAACCCTATCTGGGATTCACGAAACAGACTTAACCTCGTTCCTCTACGATTCTTCTTCTGCTGTTACTTCCACTTCCTCGCTGCGATCGTTGTTTCTTAAATCCCTGCGGGGTTTGGACCCAACCGTTGTGATTTTAGTTGACGAGGATGCGAATTTGACTTCTAATAACCTTGTTTGCAGACTAAGATCCGCGTTTAACTACCTATGGATACCTTATGACACTGTGGACACGTTCCTTCCGCGAGGGAGCAAGCAAAGGCAGTGGTACGAAGCGGACATTGGGTGGAAGATTGAGAATGTGATAGCGCATGAAGGGGTTCAGAGGGTGGAGCGGGTGGAGCCCAAGAACAGGTGGGAGCAGCGAATGAAGAATGCGAGCTTTCAAGCGGTGGCTTTCAGTGAGGACTCTGTGGCGGAGGTGAAGGCCATGCTGGATGAACATGCTGCGGGGTGGGGATTGAAGAAGGAAGATGAACACATTGTGCTCACTTGGAAAGGACACAATGTCGTATTTGCCTCTGCTTGGTTACCTGCTTGA 1578 0.5323 MPPKSNTSSAPTATEFSLTLLPIFTHTWIASQWQSFSINFPLSLYFSPNISPSDTHTLSMTQFTPSFHQIAPIPNPTMNKNQIPRTRPWPAGFPTSKALTNFGDANCMEQLLIHCANAIETNDVTLAQQILWVLNNIAPPDGDSNQRLASSFLRALTARAAKTGTCNMLVAVAAADTHNNDDLTMDTHKFSVIELANFVDLTPWHRFGFTAANAAVLEATEGFSVIHIVDLSLTHCMQIPTLIDAVASRHDVPPLIKLTVADASFRDIPPMLDLSYDELGAKLVNFARSRNVVMEFRVVSSSYQDGFAGLIEHLRVQQQHLLYTGEPRPSEALVINCHMMLHYIPDETLSGIHETDLTSFLYDSSSAVTSTSSLRSLFLKSLRGLDPTVVILVDEDANLTSNNLVCRLRSAFNYLWIPYDTVDTFLPRGSKQRQWYEADIGWKIENVIAHEGVQRVERVEPKNRWEQRMKNASFQAVAFSEDSVAEVKAMLDEHAAGWGLKKEDEHIVLTWKGHNVVFASAWLPA 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01408 525 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 83 523 IPR005202 -
Cca11g01408 525 PANTHER SCARECROW-LIKE PROTEIN 32 83 523 - -
Cca11g01408 525 ProSiteProfiles GRAS family profile. 99 523 IPR005202 -
Cca11g01408 525 Pfam GRAS domain family 108 522 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01408 Cca-Chr11 36007217 36009353 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01408 90 524 GRAS Transcription Factor Family AT3G49950 57.955 1.80e-176 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca11g01408 GRAS 1.1e-90 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01408 - - gmx:100814364 776.933