Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01401 ATGTCGAAGGCTCGTGTCTACACCGATGTCAACGTTCTTCGCCCCAAAGAGTACTGGGACTACGAGTCTCTCACCGTTCAATGGGGTGATCAAGATGATTATGAGGTTGTGCGGAAAGTGGGAAGGGGGAAGTATAGTGAGGTTTTTGAAGGCATAAATGTTAATAGCAATGAGCGCTGTATAATCAAGATTCTCAAGCCTGTCAAGAAAAAGAAGATTAAAAGAGAGATAAAAATACTTCAGAACCTTTGTGGGGGCCCAAATATTGTCAAGCTTCTTGATATTGTCAGAGATCAGCACTCTAAAACTCCTAGCTTAATATTTGAGTATGTCAACAGTACAGATTTTAAAGTGTTGTATTCAACCTTGAATGGTTATGACATACGCTATTACATATATGAGCTTCTTAAGGCTTTAGATTACTGCCATTCACAAGGCATAATGCATCGGGATGTAAACCCTCATAATTTCATGATAGATCATCAATTACGTAAACTTCGCTTGATAGATTGGGGTCTTGCTGAAGTTTATCATCCTGGAAAGGAATACAATGTTCGTGTGGCTTCAAGATACTTTAAGGGCCCTGAACTTCTAGTTGATTTGCAAGACTATGACTACTCATTAGACATGTGGAGTCTTGGCTGCATGTTTGCTGGAATGATATTTCGCAAGGAACCTTTCTTTTATGGTCACGACAACCATGATCAGCTTGTCAAAATAGCTAAGGCACAGTCGCAAACCTTGGTCTAA 750 0.3987 MSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYSTLNGYDIRYYIYELLKALDYCHSQGIMHRDVNPHNFMIDHQLRKLRLIDWGLAEVYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKAQSQTLV 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01401 249 Pfam Protein kinase domain 34 242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01401 249 SUPERFAMILY Protein kinase-like (PK-like) 8 243 IPR011009 -
Cca11g01401 249 Gene3D Transferase(Phosphotransferase) domain 1 111 243 - -
Cca11g01401 249 PANTHER CASEIN KINASE II SUBUNIT ALPHA-3 1 243 - -
Cca11g01401 249 Gene3D Phosphorylase Kinase; domain 1 34 110 - -
Cca11g01401 249 PANTHER CASEIN KINASE II SUBUNIT ALPHA 1 243 IPR045216 GO:0004674|GO:0006468
Cca11g01401 249 ProSiteProfiles Protein kinase domain profile. 34 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01401 249 ProSitePatterns Protein kinases ATP-binding region signature. 40 63 IPR017441 GO:0005524
Cca11g01401 249 CDD STKc_CK2_alpha 15 242 IPR045216 GO:0004674|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01401 Cca-Chr11 35865828 35871594 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01401 40 243 Core Cell Cycle Gene Families AT1G73690 34.112 1.47e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Cca11g01401 Pkinase 1.4e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01401 K03097 - cpap:110822226 468.774