Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01399 ATGAGTAATTATTATTATTGCTATGTTAAATATGCACACGAACCTCCAGCACTACTTCTGCGCCTCTTGCTAGTGTGCACCCTTGTGGCCTTGCGTGCGCCGGTTGCGCAACCCCCTATCGTGCGCATCCCCAGCCAGATCTCGGGTTCCAATCGCGAAGGCATGTCGAAGGCTCGTGTCTACACCGATGTCAACGTTCTTCGCCCCAAAGAGTACTGGGACTACGAGTCTCTCACCGTTCAATGGGGTGATCAAGATGATTATGAGGTTGTGCGGAAAGTGGGAAGGGGGAAGTATAGTGAGGTTTTTGAAGGCATAAATGTTAATAGCAATGAGCGCTGTATAATCAAGATTCTCAAGCCTGTCAAGAAAAAGAAGATTAAAAGAGAGATAAAAATACTTCAAAACCTTTGTGGGGGCCCAAATGTTGTCAAGCTTCTTGATATTGTCAGAGATCAACACTCTAAAACTCCTAGCTTAATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTTATTATGACATACGCTATTACATATATGAGCTTCTTAAGGCCTTAGATTACTGCCATTCTCAAGGAATAATGCATAGAGATGTTAAGCCTCATAATGTTATGATAGATCACGAATTACGAAAACTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAATACAATGTTCGTGTGGCTTCAAGATACTTTAAGGGCCCTGAACTTCTAGTTGATTTGCAAGACTATGACTACTCATTAGACATGTGGAGTCTTGGCTGCATGTTTGCTGGAATGATATTTCGCAAGGAACCTTTCTTTTACGGTCACGACAACCATGATCAGCTTGTCAAAATAGCTAAGGTGCTTGGGACTGATGAACTGAATGCATATCTGAACAAGTATCATTTGGAGCTTGATCCTCAACTTGATGCACTAGTTGGAAGGCACAGTCGCAAGCCTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCAGAGGCAATTGATTTTCTTGATAAGCTCCTTCGATATGATCACCAGGACAGGCTAACGGCAAGAGAAGCGATGGCACATCCATATTTCTCTCAAGTAAGGGCAGCTGAAAGTAGCAGAATGAGGACACAGTAA 1164 0.4201 MSNYYYCYVKYAHEPPALLLRLLLVCTLVALRAPVAQPPIVRIPSQISGSNREGMSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKIKREIKILQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTYYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01399 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Cca11g01399 387 SUPERFAMILY Protein kinase-like (PK-like) 59 377 IPR011009 -
Cca11g01399 387 SMART serkin_6 88 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01399 387 CDD STKc_CK2_alpha 69 373 IPR045216 GO:0004674|GO:0006468
Cca11g01399 387 PANTHER CASEIN KINASE II SUBUNIT ALPHA-3 16 387 - -
Cca11g01399 387 Gene3D Phosphorylase Kinase; domain 1 88 164 - -
Cca11g01399 387 Gene3D Transferase(Phosphotransferase) domain 1 165 373 - -
Cca11g01399 387 Pfam Protein kinase domain 88 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01399 387 ProSitePatterns Protein kinases ATP-binding region signature. 94 117 IPR017441 GO:0005524
Cca11g01399 387 PANTHER CASEIN KINASE II SUBUNIT ALPHA 16 387 IPR045216 GO:0004674|GO:0006468
Cca11g01399 387 ProSiteProfiles Protein kinase domain profile. 88 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01399 Cca-Chr11 35839120 35845320 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01399 86 373 Core Cell Cycle Gene Families AT1G76540 29.773 6.24e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Cca11g01399 Pkinase 6.6e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01399 K03097 - gmx:100819679 716.842