Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01388 ATGCATGCTTTAAGGATGCATAACCCTACTGAGACGCATATGATGATGCATGAAGGCAATGGAACTGGTGATTTAACACTTGTTCTTTCAACCGATGCTAAGCCTAGACTAAAATGGACACTAGATCTTCATGAACGGTTCATAGAAGCAGTCAATCACCTTGGAGGAGCAGACAAAGCTACACCAAAAACAATATTGAAACTGATGGGGATTCCTGGACTTACTCTCTGCCATTTAAAGAGTCATCTTCAGGTAACATGTTATTTCAATGAATGA 276 0.3986 MHALRMHNPTETHMMMHEGNGTGDLTLVLSTDAKPRLKWTLDLHERFIEAVNHLGGADKATPKTILKLMGIPGLTLCHLKSHLQVTCYFNE 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01388 91 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 84 - -
Cca11g01388 91 SUPERFAMILY Homeodomain-like 33 86 IPR009057 -
Cca11g01388 91 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 34 86 IPR006447 GO:0003677
Cca11g01388 91 Pfam Myb-like DNA-binding domain 36 84 IPR001005 -
Cca11g01388 91 Gene3D - 33 88 - -
Cca11g01388 91 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 84 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01388 Cca-Chr11 35720202 35720554 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01388 20 84 G2-like Transcription Factor Family AT1G69580 72.308 1.93e-27 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca11g01388 Myb_DNA-binding 4.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01388 - - ccaj:109818888 178.333