Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01378 ATGGCTGGAAATGGAATCCCCCAAGAGCAGCCACTGTTGGCGTCGTTTCaggaggaggaggaggaggagCCGCGAGAAACGGCGTACGAGTCCTCCGAGAAGATCGTGGTGGTTGGAATCGACGAGTCCGATAGCGAGGAGAATTGGGGCCGAGTGCCGCCCTTTTCGTGGAAGAAGCTATGGCTCTTTACTGGGCCGGGCTTTTTGATGAGCATAGCGTTTCTGGACCCGGGGAACATCGAGGGGGACCTGCAGGCCGGTGCCATTGCTGGCTACTCCCTGCTCTGGCTTCTCTTGTGGGCCACAGCCATGGGCCTCTTGATCCAGCTCCTGTCCGCGCGCCTCGGCGTCGCCACCGGGAAGCACTTGGCCGAGCTCTGCCGGGAGGAGTACCCCGCGTGGGCCAGGATTGTGCTTTGGGTCATGGCTGAACTCGCGCTCATTGGCTCCGATATTCAGGAGGTTATTGGGAGCGCTATTGCTATCAGAATTCTCAGTAATGGGGTTGTGCCCCTTTGGGCTGGGGTTGTCATTACGGCTCTTGATTGTTTTATTTTTCTCTTTCTTGAGAACTATGGTGTGAGGTCATTGGAAGCTTTTTTTGCTGTTCTCATTGGTGTAATGGCAATCTCGTTTGCATGGATGTTTGGCGAAGCGAAGCCCAGTGGCAAGGAACTTCTTCTTGGCATTTTGGTTCCAAAACTCAGCTCCAGAACTATACAGCAGGCTGTTGGAGTTGTGGGGTGCCTTATTATGCCCCACAATGTGTTCTTGCACTCTGCTCTTGTTCAGTCAAGGCAGGTTGATCGCAACAAGAAAGGCCGGGTTCAAGAAGCTCTTAACTATTACTCTATAGAGTCCACCCTTGCCCTTATAGTCTCCTTCATCATAAATATATTTGTCACAACTGTGTTTGCTAAGGGATTTTATGGTTCTGAACTTGCAAATAGCATTGGTCTTGTAAATGCAGGACAGTATCTACAGGAAACATATGGGGGTGGACTATTTCCAATTTTATATATATGGGGTATTGGGCTATTAGCTGCAGGTCAAAGTAGCACTATCACCGGTACTTATGCTGGACAATTCATCATGGGAGGTTTTCTAAATTTAAAGTTAAAGAAGTGGATTAGGGCGTTGATTACCCGAAGTTGTGCAATAATTCCAACCATTATAGTTGCTCTTATATTTGATACCTCCGAGGATTCATTAGATGTTCTAAATGAGTGGCTTAATGTTCTTCAGTCAGTCCAAATCCCCTTTGCCCTTATTCCCTTGCTTTGTCTGGTGTCAAAGGAGCAGATAATGGGCACTTTCAGAATTGGCGCTGTCCTCAAGACTGTTTCATGGCTTGTGGCTGCTCTGGTGATAGTGATTAATGGCTACCTTTTGATGGAATTCTTTTCCTCTGAAGTGAATGGACCAATGTTTGGCGCTGTAGTGGGTGCAATAACTGCTGCATATGTTGCATTCGTAATATACCTGATTGGGCAGGCCATCACCTTTTTACCTTGGCAATGCGTAACACAACAAAAGACTATTGCTCACCCAGAGAGTTGA 1560 0.4724 MAGNGIPQEQPLLASFQEEEEEEPRETAYESSEKIVVVGIDESDSEENWGRVPPFSWKKLWLFTGPGFLMSIAFLDPGNIEGDLQAGAIAGYSLLWLLLWATAMGLLIQLLSARLGVATGKHLAELCREEYPAWARIVLWVMAELALIGSDIQEVIGSAIAIRILSNGVVPLWAGVVITALDCFIFLFLENYGVRSLEAFFAVLIGVMAISFAWMFGEAKPSGKELLLGILVPKLSSRTIQQAVGVVGCLIMPHNVFLHSALVQSRQVDRNKKGRVQEALNYYSIESTLALIVSFIINIFVTTVFAKGFYGSELANSIGLVNAGQYLQETYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLKLKKWIRALITRSCAIIPTIIVALIFDTSEDSLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGTFRIGAVLKTVSWLVAALVIVINGYLLMEFFSSEVNGPMFGAVVGAITAAYVAFVIYLIGQAITFLPWQCVTQQKTIAHPES 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01378 519 PANTHER METAL TRANSPORTER NRAMP3 PROTEIN 19 517 - -
Cca11g01378 519 Pfam Natural resistance-associated macrophage protein 80 442 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca11g01378 519 MobiDBLite consensus disorder prediction 1 32 - -
Cca11g01378 519 Hamap Divalent metal cation transporter MntH [mntH]. 46 468 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca11g01378 519 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 19 517 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca11g01378 519 PRINTS Natural resistance-associated macrophage protein signature 139 165 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca11g01378 519 PRINTS Natural resistance-associated macrophage protein signature 169 188 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca11g01378 519 PRINTS Natural resistance-associated macrophage protein signature 194 215 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca11g01378 519 PRINTS Natural resistance-associated macrophage protein signature 243 266 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca11g01378 519 PRINTS Natural resistance-associated macrophage protein signature 350 369 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca11g01378 519 PRINTS Natural resistance-associated macrophage protein signature 378 395 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca11g01378 519 PRINTS Natural resistance-associated macrophage protein signature 412 431 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca11g01378 519 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 58 436 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01378 Cca-Chr11 35558537 35562828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01378 34 505 Inorganic Solute Cotransporters AT2G23150 80.421 0.0 790
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01378 K21398 - gmx:547711 932.169