Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01377 ATGACCTTCACCAGGGAGGAATAtgaagttgatgatcatgttcatgtagatggtgGATCAGAATCACACAACATTGCCAACCATGAAATTGTGACCCCTGAAGGTGATGATGATCATGAGAAGAATAACTTGGGAGGAGAATGGTTGAGTTTAGGCCTCAAAGGTGACATGCCTTTTGAAGCAGCAGAACAAAACAACAAGGCTAACCATGATTCACAATCATCAAAGCCTCTCCACAACAAGGTGTTCTCATGCAACTTCTGCATGAGAAAGTTTTACAGTTCACAAGCCTTGGGGGGTCACCAGAATGCACACAAGAGGGAAGGAGAAGCAGCAAGAAGCTACCAATCTCATAGGATGATGACAACATCATCATCAATGGGGCTTGCATACTCTTCTTTGGCATCTAGGTCACTAGGAATTCAGCCTCACTCTCTTGTGCATAAGCCAAGTAGAGAAAGATCTGCTATGGTGGCCAAATTCAGTGATGCCAATAGTTATGGGATTGGCGTGACATCATGGACACCCTTTATGGTTGAACAAGCTATGGATTTCTATTGGCCAGGTAGCTTCCGGTTGGACTTGCCAAAGCAAGAATCTGATGTTAAGAAGATTGACTTGGATCTTAGGCTCTGA 636 0.4198 MTFTREEYEVDDHVHVDGGSESHNIANHEIVTPEGDDDHEKNNLGGEWLSLGLKGDMPFEAAEQNNKANHDSQSSKPLHNKVFSCNFCMRKFYSSQALGGHQNAHKREGEAARSYQSHRMMTTSSSMGLAYSSLASRSLGIQPHSLVHKPSRERSAMVAKFSDANSYGIGVTSWTPFMVEQAMDFYWPGSFRLDLPKQESDVKKIDLDLRL 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01377 211 PANTHER ZINC FINGER PROTEIN 4-LIKE 1 211 - -
Cca11g01377 211 SUPERFAMILY beta-beta-alpha zinc fingers 79 108 IPR036236 -
Cca11g01377 211 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Cca11g01377 211 Gene3D Classic Zinc Finger 60 135 - -
Cca11g01377 211 PANTHER ZINC FINGER PROTEIN 4-LIKE 1 211 - -
Cca11g01377 211 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01377 Cca-Chr11 35534311 35535606 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01377 65 205 C2H2 Transcription Factor Family AT1G24625 40.000 1.26e-22 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01377 - - ccaj:109809498 437.573