Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca11g01375 | ATGACTACTATCTGCTCCGCCGAGCTCAATTACCTAGTTTTTCGCTACCTTCAAGAATCAGGTTTCACACATGCTGCTTTTACTTTTGGATATGAAGCTGGTATTAACAAATGCTCCATTGATGGAAATTTGGTGCCACCACATGCTCTTGTTACATTTGTTCAGAAAGGTCTACAGTACTTTGAAATGGAAGCCAACTTAAGCAATTGTGATGCCGACCTGGAAGAAGATTTTTCATTCTTACAACCTTTGGATCTTATCACGAAAGATGTGCATGAGCTTAGGCAAATGATAAGTgaaagaaggaaaaaactactgaaggaaagaaagaaggaaTTTGAAAAGGAGCATGAAGGTGAACGTGTACGGGCAAGAGAAAAGGAAAGACGTGAAAGAGAGAAAGAAGTTGAAAAGGATAGACGCGAAAGGGAGAAAGAAGCTGAAAAGGATAGACGTGAAAGGGAGAAAGAAGCTGAAAAGGATAGACGCGAACGGGAGAAAGAAGCTGAAAAGGATAGACGTGAAAGGGAGAAAGAAGCTGAAAAAGATAGGGAGAAGGTAGAAAATGATAAAGAGCGAGAACAACAGCATGGAGATCAGTCTGCCAGAGAAATGGTCATAGATCATGAAGATAGGGTTCATGTAAAGCATGAAGATAATGGAGCAGTTGGAGGACCAGAACCAATGGACATCTCTACAACATCAACATCTCAGCTATGTGAAATTCCTAGTTCAGATGTGACAATTTTGGAAGGTCATACTTCAGAGGTGTGTGCTTGTGCATGGAGCCCTACTGGATCCCTTCTTGCATCAGGATCTGGGGATTCGACAGCTCGTATTTGGACGATAGCAGAAGGGAGATGTAAGCCTGCTGCACAGAGTGGTCCTCTGAATGTGTTGGTGTTGAAGCATGTTAGGGGTAAAACAAATGAAAAGAGTAAAGATGTCACTACACTTGATTGGAATGGGGAGGGGACACTTCTTGCAACTGGTTCATATGATGGGCAAGCAAGAATTTGGACCACTAATGGTGAACTGAAGAGTACATTAAGCAAGCACAAGGGACCAATATTCTCTCTGAAGTGGAATAAGAAAGGCGATTATCTTCTGACTGGAAGTTGTGATCAAACTGCAATTGTGTGGGATGTGAAGGCAGAGGAATGGAAACAACAATTTGAATTTCATTCAGGTCCAACACTTGATGTTGATTGGCGCAACAATGTGTCTTTTGCCACAAGTTCCACAGACAATATGATATATGTTTGCAAAGTTGGAGAAAGCCACCCTATAAAAACTTTTGCTGGGCACCAGGGTGAAGTTAATTGTGTCAAATGGGATCCCACAGGTTCATTGCTGGCCTCCTGTTCTGATGATATCACAGCAAAGATATGGAGTATGAAGCAGGATACTTATCTTCACGACTTAAGGGAGCATTCCAAGGAGATTTATACCATCAGATGGAGCCCCACTGGTCCTGGTACAAATAACCCTAATCAGAAACTGGTGTTGGCTAGGTAA | 1518 | 0.4124 | MTTICSAELNYLVFRYLQESGFTHAAFTFGYEAGINKCSIDGNLVPPHALVTFVQKGLQYFEMEANLSNCDADLEEDFSFLQPLDLITKDVHELRQMISERRKKLLKERKKEFEKEHEGERVRAREKERREREKEVEKDRREREKEAEKDRREREKEAEKDRREREKEAEKDRREREKEAEKDREKVENDKEREQQHGDQSAREMVIDHEDRVHVKHEDNGAVGGPEPMDISTTSTSQLCEIPSSDVTILEGHTSEVCACAWSPTGSLLASGSGDSTARIWTIAEGRCKPAAQSGPLNVLVLKHVRGKTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWTTNGELKSTLSKHKGPIFSLKWNKKGDYLLTGSCDQTAIVWDVKAEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKVGESHPIKTFAGHQGEVNCVKWDPTGSLLASCSDDITAKIWSMKQDTYLHDLREHSKEIYTIRWSPTGPGTNNPNQKLVLAR | 505 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca11g01375 | 505 | PRINTS | G protein beta WD-40 repeat signature | 369 | 383 | IPR020472 | - | |
| Cca11g01375 | 505 | PRINTS | G protein beta WD-40 repeat signature | 452 | 466 | IPR020472 | - | |
| Cca11g01375 | 505 | PRINTS | G protein beta WD-40 repeat signature | 269 | 283 | IPR020472 | - | |
| Cca11g01375 | 505 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 309 | 340 | - | - | |
| Cca11g01375 | 505 | MobiDBLite | consensus disorder prediction | 109 | 209 | - | - | |
| Cca11g01375 | 505 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 433 | 474 | IPR001680 | GO:0005515 | |
| Cca11g01375 | 505 | PANTHER | WD40 REPEAT PROTEIN | 4 | 504 | IPR045183 | GO:0003714|GO:0016575 | |
| Cca11g01375 | 505 | CDD | WD40 | 247 | 491 | - | - | |
| Cca11g01375 | 505 | Pfam | WD domain, G-beta repeat | 247 | 281 | IPR001680 | GO:0005515 | |
| Cca11g01375 | 505 | Pfam | WD domain, G-beta repeat | 311 | 340 | IPR001680 | GO:0005515 | |
| Cca11g01375 | 505 | Pfam | WD domain, G-beta repeat | 345 | 382 | IPR001680 | GO:0005515 | |
| Cca11g01375 | 505 | Pfam | WD domain, G-beta repeat | 429 | 465 | IPR001680 | GO:0005515 | |
| Cca11g01375 | 505 | Pfam | LisH | 8 | 33 | IPR006594 | GO:0005515 | |
| Cca11g01375 | 505 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 369 | 383 | IPR019775 | - | |
| Cca11g01375 | 505 | PANTHER | F-BOX-LIKE/WD REPEAT TBL1XR1-LIKE PROTEIN | 4 | 504 | - | - | |
| Cca11g01375 | 505 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 250 | 287 | - | - | |
| Cca11g01375 | 505 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 350 | 384 | - | - | |
| Cca11g01375 | 505 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 350 | 391 | IPR001680 | GO:0005515 | |
| Cca11g01375 | 505 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 250 | 291 | IPR001680 | GO:0005515 | |
| Cca11g01375 | 505 | SMART | WD40_4 | 343 | 382 | IPR001680 | GO:0005515 | |
| Cca11g01375 | 505 | SMART | WD40_4 | 426 | 465 | IPR001680 | GO:0005515 | |
| Cca11g01375 | 505 | SMART | WD40_4 | 298 | 341 | IPR001680 | GO:0005515 | |
| Cca11g01375 | 505 | SMART | WD40_4 | 385 | 423 | IPR001680 | GO:0005515 | |
| Cca11g01375 | 505 | SMART | WD40_4 | 243 | 282 | IPR001680 | GO:0005515 | |
| Cca11g01375 | 505 | Coils | Coil | 96 | 197 | - | - | |
| Cca11g01375 | 505 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 309 | 340 | IPR001680 | GO:0005515 | |
| Cca11g01375 | 505 | Gene3D | - | 2 | 92 | - | - | |
| Cca11g01375 | 505 | Gene3D | - | 238 | 505 | IPR015943 | GO:0005515 | |
| Cca11g01375 | 505 | SMART | Lish | 5 | 37 | IPR006594 | GO:0005515 | |
| Cca11g01375 | 505 | SUPERFAMILY | WD40 repeat-like | 248 | 491 | IPR036322 | GO:0005515 | |
| Cca11g01375 | 505 | ProSiteProfiles | LIS1 homology (LisH) motif profile. | 5 | 37 | IPR006594 | GO:0005515 | |
| Cca11g01375 | 505 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 433 | 467 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca11g01375 | Cca-Chr11 | 35489486 | 35502306 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca11g01375 | 314 | 485 | Eukaryotic Initiation Factors Gene Family | AT2G46280 | 27.368 | 7.67e-11 | 60.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca11g01375 | K04508 | - | gmx:100779840 | 640.958 |