Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01366 ATGGAAGCTCTTCCTTACACCAATTTGCACTCACTCGCTCCTACCCCCATTCGATCCTCCAAGCTCCCCCTTCGCCCGCTCCAATTTTCTATCAAACCTATTTATTCCTCCAAATTCCTCATTCTCCACCACCACAGGCTCCGTTGCCTAGCTGAATccaccaccaaccatggccaccacgacgaccatcacggtcaccaccaccactgtcaccaccaccaccacTCTCACGGCGTCGATGGCGCTAATCTCACCGCGCCTCAGAAGGCGATTATCACGTTCGCCAAGGCCACGCGATGGATGGAGCTGGCCGATATCCTGAGGGAGCACTTGCATCTGTGCTGCTTCTCCACCGCCTTGTTTGTTGCCGCCGCAATTTGCCCTCACGCCTTGCCTAAGCCCCTCGTCAAGCCTCTCCAAAACGCTCTCATTTTCGTCGCTTTTCCTTTGGTTGGGGTTTCTGCATCGCTTGACGCTCTTATTGAGGTCAGTAGCGGAAAGGTGAACATCCATGTGTTGATGGCAATGGCAGCCTTTGCGTCAATGTTCATGGGAAACTCTTTGGAAGGAGGCTTGCTTCTTGCCATGTTTAATCTGGCGCATATAGCCGAAGAGTATTTCACCAGCCGATCAGTGGTGGATGTTAGGGAATTGAAAGAAAATAATCCTGATTTCGCCCTTGTTCTGGATACCAATGATGATAAACTTCCCAATACATTTGACTTGGCATACAAGAGGGTTCCCGTGCATGATGTTACTGTGGGATCATATATCCTGGTTGGTGCCGGCGAGTCTGTGCCAGTAGATTGTGATGTATACCAAGGCAGTGCGACAATTACCATCGAGCACTTGACAGGGGAAGTCAAACCTTTGGAGGCCAAAGTTGGAGATAGAATTCCTGGTGGTGCAAGGAACTTGGATGGGAGGATAATTCTGAAGGTAAAGAAAACTTGGAAGGAATCAACTCTCAGCAGAATTGTTCAATTGACCGAAGAAGCACAGTCAAATAAACCTAAACTTCAAAGGTGGCTGGATGAATTTGGTGAACGTTACAGCAAAGTTGTTGTGGTGTTATCAATTGCTATTGCTGTTATTGGGCCACTTGTATTTAAGTGGCCATTCATTAGTACATCTGCTTGCAGAGGTTCAATTTACAGAGCCTTAGGGCTTATGGTGGCAGCATCACCTTGTGCCTTGGCTGTGGCCCCATTGGCATACGCTATAGCAATCAGCTCCTGTGCCAGAAAGGGGATATTGCTCAAAGGTGGGCATGTTCTGGATGCTCTAGCTTCTTGTCGTACTATTGCATTCGACAAAACAGGGACATTGACAACTGGTGGACTTGTATTCAAAGCAATTGAACCCATTTATGGTCATCGTGTTAGAAACAATGAATCAAATGTTTCTTCCTGTTGCATTCCCACCTGTGAAAAAGAAGCTCTTGCTGTTGCTGCAGCTATGGAAAAGGGTACTACTCACCCCATTGGAAGGGCTGTGGTTGACCATAGTGAAGGCAAAGACCTCCCATCTGTTTCTGTTGAAAGTTTTGAATACTTTCCTGGTAGAGGCCTTACTGCTACTGTTAATAGCGTTGAGTCAGGAGTTGGAGGTGCTAAACTATTGAAAGCATCACTTGGATCTATAGATTTCATCACTTCCTTTTGTCAATCTGAAGACGAGTCAGAAAAGATCAAGGAAGCTGTTAATACATCTTCTTATGGAAGTGAATATGTTCATGCTGCCCTTTCAGTTAATAAGAAGGTAACATTGATTCACCTAGAGGATAGGCCTCGTCCTGGCGTTTTTAATGTTATTCAAGAATTGCAAGATGAAGCAAAGTTTCGTGTGATGATGTTAACTGGTGATCACGAGTATAGTGCAAGGAGAGTTGCAAGTGCTGCGGGCATCAATGAGTATTATTGCAACCTGAAGCCTGAAGATAAGCTGAGTCATGTAAAGGATATCTCAAGAGATATGGGGGGAGGCTTAATTATGGTTGGTGAAGGCATCAATGATGCCCCAGCACTTGCTGCTGCAACTGTCGGCATAGTTCTTGCTCACCGTGCTAGTGCAACTGCCATAGCTGTTGCAGATGTTTTGTTGCTTAGAGAGAACATTTCTGCAGTGCCATTTTGTATAGCCAAGTCTCGCCAAACAACTTCACTGATTAAACAAAATGTGGCTTTAGCATTGACATCCATCGTCTTAGCTTCCCTTCCATCAGTTTTGGGATTTCTGCCATTGTGGTTAACGGTTCTTTTACACGAAGGTGGAACCCTGCTTGTATGTCTCAATTCGGTACGTGCCCTGAATGAACCATCTTGGTCCTGGAAGCATGATATATCACATTTGATTAGCCAAGTTAAATCTAGACTCGTATCTCTCAATACAAATATCACGGCCTCAAGAAGTAATATAACAACGAATTTGTAA 2433 0.4377 MEALPYTNLHSLAPTPIRSSKLPLRPLQFSIKPIYSSKFLILHHHRLRCLAESTTNHGHHDDHHGHHHHCHHHHHSHGVDGANLTAPQKAIITFAKATRWMELADILREHLHLCCFSTALFVAAAICPHALPKPLVKPLQNALIFVAFPLVGVSASLDALIEVSSGKVNIHVLMAMAAFASMFMGNSLEGGLLLAMFNLAHIAEEYFTSRSVVDVRELKENNPDFALVLDTNDDKLPNTFDLAYKRVPVHDVTVGSYILVGAGESVPVDCDVYQGSATITIEHLTGEVKPLEAKVGDRIPGGARNLDGRIILKVKKTWKESTLSRIVQLTEEAQSNKPKLQRWLDEFGERYSKVVVVLSIAIAVIGPLVFKWPFISTSACRGSIYRALGLMVAASPCALAVAPLAYAIAISSCARKGILLKGGHVLDALASCRTIAFDKTGTLTTGGLVFKAIEPIYGHRVRNNESNVSSCCIPTCEKEALAVAAAMEKGTTHPIGRAVVDHSEGKDLPSVSVESFEYFPGRGLTATVNSVESGVGGAKLLKASLGSIDFITSFCQSEDESEKIKEAVNTSSYGSEYVHAALSVNKKVTLIHLEDRPRPGVFNVIQELQDEAKFRVMMLTGDHEYSARRVASAAGINEYYCNLKPEDKLSHVKDISRDMGGGLIMVGEGINDAPALAAATVGIVLAHRASATAIAVADVLLLRENISAVPFCIAKSRQTTSLIKQNVALALTSIVLASLPSVLGFLPLWLTVLLHEGGTLLVCLNSVRALNEPSWSWKHDISHLISQVKSRLVSLNTNITASRSNITTNL 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01366 810 SFLD Haloacid Dehalogenase 418 719 - -
Cca11g01366 810 SUPERFAMILY Calcium ATPase, transmembrane domain M 172 751 IPR023298 -
Cca11g01366 810 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 244 457 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca11g01366 810 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 546 746 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca11g01366 810 ProSitePatterns E1-E2 ATPases phosphorylation site. 438 444 IPR018303 -
Cca11g01366 810 PRINTS P-type cation-transporting ATPase superfamily signature 436 450 - -
Cca11g01366 810 PRINTS P-type cation-transporting ATPase superfamily signature 589 600 - -
Cca11g01366 810 PRINTS P-type cation-transporting ATPase superfamily signature 612 622 - -
Cca11g01366 810 PRINTS P-type cation-transporting ATPase superfamily signature 666 685 - -
Cca11g01366 810 PRINTS P-type cation-transporting ATPase superfamily signature 690 702 - -
Cca11g01366 810 SUPERFAMILY HAD-like 434 766 IPR036412 -
Cca11g01366 810 CDD P-type_ATPase_HM 114 768 - -
Cca11g01366 810 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 42 799 - -
Cca11g01366 810 Pfam haloacid dehalogenase-like hydrolase 433 679 - -
Cca11g01366 810 MobiDBLite consensus disorder prediction 61 76 - -
Cca11g01366 810 SFLD p-type atpase 418 719 IPR044492 -
Cca11g01366 810 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 170 768 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cca11g01366 810 Pfam E1-E2 ATPase 244 416 - -
Cca11g01366 810 MobiDBLite consensus disorder prediction 55 79 - -
Cca11g01366 810 SUPERFAMILY Calcium ATPase, transduction domain A 244 329 IPR008250 -
Cca11g01366 810 Gene3D - 209 334 - -
Cca11g01366 810 Gene3D - 447 597 IPR023299 GO:0000166
Cca11g01366 810 Gene3D - 429 717 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01366 Cca-Chr11 35335148 35350460 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01366 85 791 Primary Pumps ATPases AT4G37270 76.945 0.0 1099
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01366 K01534 - gmx:100776309 1390.17