Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01365 ATGATGGCGGTGAACAGAAAGGACATGGACCGGATCAAGGGCCCATGGAGCCCGGAAGAGGACGAGGCCCTGCAGAAGCTGGTAGAGAGGCACGGGCCCAGAAACTGGTCGCTTATCAGCAGGTCAATCCCGGGCCGCTCGGGGAAGTCCTGCAGGCTCCGATGGTGCAACCAGCTGTCCCCTCAGGTGGAGCACCGGGCCTTCACGCCCGAAGAGGACGAAACCATTATCCGGGCCCATGCCCGCTTCGGAAACAAGTGGGCCACCATAGCCCGCCTCCTCTCGGGCCGCACCGATAACGCTATCAAGAACCACTGGAACTCAACCCTAAAGCGCAAGTGCGCCTCCATCATGATCGCCGACGATCGCCCCTTCAAGCGCTCCGTCAGCGCCGGCGCCGCGCTCCCGCTTTCTCCGGGGAGCCCCTCCGGATCTGATGTGAGCGAGTCCAGCGCTCCCGGCGTGCTCTCTCCTTCGCACGTGTTTCGGCCCGTGCCGCTTCGCCCTACCGTGGAAACAGCCTCCTCCAGCGACGACGGGCCCACCACTTCGCTCTCGCTCTCTCTTCCCGGCGTGGAGTCATCGGAAGTGTCGAATCGCGCGGTGGCGGTGGCGGCGCCGGTGATTCCTGTGGCGGCGATGCCGGTTTCCTCCTCGGCGGTGGAGGTTGGATTAGGAGCGATGAATCTGAGCGCGGAGTTTATGGCGGTGATGCATGAGATGATACGGACGGAAGTGAGGAGTTACATGGAGCAGCAGAATCAGAATGGGATGTGTTTTGAAGGAGTGGATGGGTTTAGGAATGTGTCGGTGAAGCGAATTGGAATTAGCAGAGTTGATTCCTAA 846 0.6123 MMAVNRKDMDRIKGPWSPEEDEALQKLVERHGPRNWSLISRSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDETIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASIMIADDRPFKRSVSAGAALPLSPGSPSGSDVSESSAPGVLSPSHVFRPVPLRPTVETASSSDDGPTTSLSLSLPGVESSEVSNRAVAVAAPVIPVAAMPVSSSAVEVGLGAMNLSAEFMAVMHEMIRTEVRSYMEQQNQNGMCFEGVDGFRNVSVKRIGISRVDS 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01365 281 Gene3D - 66 128 - -
Cca11g01365 281 MobiDBLite consensus disorder prediction 141 155 - -
Cca11g01365 281 CDD SANT 15 57 IPR001005 -
Cca11g01365 281 ProSiteProfiles Myb-like domain profile. 8 59 IPR001005 -
Cca11g01365 281 PANTHER MYB TRANSCRIPTION FACTOR 2 252 - -
Cca11g01365 281 SUPERFAMILY Homeodomain-like 10 106 IPR009057 -
Cca11g01365 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 63 IPR017930 -
Cca11g01365 281 MobiDBLite consensus disorder prediction 136 163 - -
Cca11g01365 281 CDD SANT 67 110 IPR001005 -
Cca11g01365 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 114 IPR017930 -
Cca11g01365 281 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Cca11g01365 281 SMART sant 12 61 IPR001005 -
Cca11g01365 281 SMART sant 64 112 IPR001005 -
Cca11g01365 281 Pfam Myb-like DNA-binding domain 16 74 - -
Cca11g01365 281 MobiDBLite consensus disorder prediction 170 189 - -
Cca11g01365 281 PANTHER MYB PROTEIN-RELATED 2 252 - -
Cca11g01365 281 Gene3D - 12 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01365 Cca-Chr11 35322562 35324053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01365 6 280 MYB Transcription Factor Family AT4G37260 51.713 3.59e-98 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca11g01365 Myb_DNA-bind_6 1.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01365 K09422 - gmx:100806145 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01365 11 35322562 35324053 Cca06g01497 06 29931816 29933800 PCT