Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01362 ATGATGAGTCTCCTCTTTCGAGCTTTGATCATTTCATTGGCTCTTGTCGTCACTGTAAACCCATGTTGCGCCCTAACTAGAGACGGTGTGCTGTTGCTCTCTTTCAAGTACGCTGTGCTGAACGACCCACTTAACGTCCTCGCCAACTGGAACTACACTGACGAGTCCCCGTGTTCGTGGAACGGAGTGTCGTGTTCAACAAACGGCACGGAGTTCCGCGTGACTTCGTTGTCGCTTCCGAATTCTCAGCTTCTGGGTTCGATCCCCTCCGATCTGGGCTCCATCCAACACCTTCAAATTCTCGACCTTTCCAACAACTCCCTCAACGGCTCTCTCCCAGCCTCGCTCTCCCAAGCCTCCGAGCTTCGCTTCCTCAACCTCTCCAACAACCTCATAACGGGGGAGCTTCCGGACTCCTTAACGGAGCTTCGGAGCCTCCAGTGTCTTAACCTCTCCGACAATGCCTTCGCGGGAAAGCTTCCCAACGCTTTCTCCGACATGCAAAACCTAACTTCCGCTTCGTTTAAAAACAATTACTTCTCCGGCTTTCTCCCCACCCATTTGAGAACGTTGCAGGTTCTCGATCTCTCCTCCAACCTCTTGAACGGGACCCTCCCCGCGGATTTCGGCGGCGACGCCTTCCGTTACCTCAACATCTCCTACAACAGATTCTCCGGCGACATCCCGACGGAGTTCGCCGCGAGGATTCCGGAGAACGCCACCGTGGATCTCTCCTTCAACAACCTCACCGGCGAGGTGCCTGACTCCGCGGTGTTTTTGAATCAGAACTCGAAATCGTTCTCTGGGAACGTTAACCTGTGTGGAGAACCAACCAAGAATAATTGTCCTATTCCTTCTTCTCCGTCGGTGGAACCGAAAGTGTCGTCTCCTATATCTCCTCCAGCGATCGCCGCGATCCCGAAGACTTTTGATTCGCCGGCGGGGGAGAAAGAAAGCGGTCTCCGGCGAGGAACGGTGATAGGAATCGTGGTGGGAGATGTGATCGGCGTTGGAGTGTTGGCGATGTTGTTTGTGTACGTGTACCGGATGAAGAAAAAGAAGGACGCGGAGGGTGCGGCGAAGAACGAAGCGAGCGTGAGAAGGAGTGGGAGTGAGAGTTCGTCAACCTCGGAGTCGAGAGGGTTTACGAGGTGGTCGTGTTTGAGGAACAGAGTTGAAGAAGAAGAGGGTTCGGAGACAACAAGGTCTTCGGAGAGTGACGTGGAGGGTGGTGGCACGCAAGAGAACCAGAACCATAATAAAGCAGAGGGCAAAACGGGAACTCTTGTGACCGTGGACTGTGAACGACAACTTGAAGTCGAAACGCTGCTGAAGGCTTCGGCGTACATATTGGGCGCCACGGGGTCGAGCATAATGTACAAGGCTGTGCTGGAAGACGGCACGTCGTTGGCGGTTCGCAGAATCGGCGAGAGTGGCGTGGAGCGTTTCAAGGACTTCGAAAACCAGGTTCGGGTTATCGCTAAACTGGTTCACCCTAACCTCGTTCGCGTTCGTGGCTTCTACTGGGGTCACGACGAGAAGCTCATCATCTATGATTTCGTTCCAAACGGTTGCCTCGCCAATGTTCGTTACAGGAAGGTGGGGTCCTCGCCGAGTCATTTACCGTGGGAAATCCGGCTCAAGATAGCCAAAGGGGTGGCACGTGGGCTGACTTACCTCCACGAGAAGAAGCACGTGCATGGAAACTTGAAGCCTAGCAATATTCTACTGGGCAACGACATGGAGCCCAAGATTGGAGACTTTGGGCTTGAGAGGATTGTCACGGGTGACACCAGTTATAAGGCTGGCGGGTCCGCGCGTATTTTTGGGAGCAAGAGATCCACGGTGTCCAGAGATAGTTTCCAAGACGTTACGTTTGGGCCAAGCCCGAGCCCGAGCCCGAGCTCAATAAGCGGGGTGTCTCCTTACCATGCTCCCGAGTCGCTCAGGAACCTGAAGCCTCACCCGAAGTGGGATGTGTACTCCTTCGGGGTCATGTTTCTGGAGCTGCTAACGGGGAAGATTGTGGTTTTAGATGATATGGGCCAAGGGCCTGGGCTTTTGGCTGAGGATAAGAACCGGGCCTTGCGCATGGTTGATATGGCTATCCGGGCTGACATGGAGGGTAGGGAGGAGGCCTTGTTGACCTACTTCAAGCTAGGGTATAGTTGTGTGTCTGGGGTTCCACAGAAAAGGCCTCCAATGAAAGAGGTGCTACAAGTTCTTGAAAAGATCTCATCCTCGTCTTCCTCGTCCTCGTATTATTATAGCGTCTAA 2277 0.5375 MMSLLFRALIISLALVVTVNPCCALTRDGVLLLSFKYAVLNDPLNVLANWNYTDESPCSWNGVSCSTNGTEFRVTSLSLPNSQLLGSIPSDLGSIQHLQILDLSNNSLNGSLPASLSQASELRFLNLSNNLITGELPDSLTELRSLQCLNLSDNAFAGKLPNAFSDMQNLTSASFKNNYFSGFLPTHLRTLQVLDLSSNLLNGTLPADFGGDAFRYLNISYNRFSGDIPTEFAARIPENATVDLSFNNLTGEVPDSAVFLNQNSKSFSGNVNLCGEPTKNNCPIPSSPSVEPKVSSPISPPAIAAIPKTFDSPAGEKESGLRRGTVIGIVVGDVIGVGVLAMLFVYVYRMKKKKDAEGAAKNEASVRRSGSESSSTSESRGFTRWSCLRNRVEEEEGSETTRSSESDVEGGGTQENQNHNKAEGKTGTLVTVDCERQLEVETLLKASAYILGATGSSIMYKAVLEDGTSLAVRRIGESGVERFKDFENQVRVIAKLVHPNLVRVRGFYWGHDEKLIIYDFVPNGCLANVRYRKVGSSPSHLPWEIRLKIAKGVARGLTYLHEKKHVHGNLKPSNILLGNDMEPKIGDFGLERIVTGDTSYKAGGSARIFGSKRSTVSRDSFQDVTFGPSPSPSPSSISGVSPYHAPESLRNLKPHPKWDVYSFGVMFLELLTGKIVVLDDMGQGPGLLAEDKNRALRMVDMAIRADMEGREEALLTYFKLGYSCVSGVPQKRPPMKEVLQVLEKISSSSSSSSYYYSV 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01362 758 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Cca11g01362 758 Pfam Leucine Rich Repeat 122 141 IPR001611 GO:0005515
Cca11g01362 758 Pfam Leucine Rich Repeat 97 117 IPR001611 GO:0005515
Cca11g01362 758 MobiDBLite consensus disorder prediction 357 424 - -
Cca11g01362 758 Gene3D Transferase(Phosphotransferase) domain 1 522 755 - -
Cca11g01362 758 MobiDBLite consensus disorder prediction 404 424 - -
Cca11g01362 758 Gene3D Ribonuclease Inhibitor 188 284 IPR032675 -
Cca11g01362 758 ProSiteProfiles Protein kinase domain profile. 445 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01362 758 Gene3D Phosphorylase Kinase; domain 1 412 520 - -
Cca11g01362 758 MobiDBLite consensus disorder prediction 620 643 - -
Cca11g01362 758 ProSiteProfiles Leucine-rich repeat profile. 121 144 IPR001611 GO:0005515
Cca11g01362 758 MobiDBLite consensus disorder prediction 366 384 - -
Cca11g01362 758 PRINTS Leucine-rich repeat signature 98 111 - -
Cca11g01362 758 PRINTS Leucine-rich repeat signature 188 201 - -
Cca11g01362 758 MobiDBLite consensus disorder prediction 620 642 - -
Cca11g01362 758 SMART LRR_typ_2 95 119 IPR003591 -
Cca11g01362 758 SMART LRR_typ_2 143 166 IPR003591 -
Cca11g01362 758 SMART LRR_typ_2 188 211 IPR003591 -
Cca11g01362 758 Gene3D Ribonuclease Inhibitor 26 187 IPR032675 -
Cca11g01362 758 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 11 748 - -
Cca11g01362 758 SUPERFAMILY L domain-like 26 277 - -
Cca11g01362 758 SUPERFAMILY Protein kinase-like (PK-like) 450 746 IPR011009 -
Cca11g01362 758 Pfam Protein kinase domain 451 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01362 758 PANTHER BNAC07G16060D PROTEIN 11 748 - -
Cca11g01362 758 MobiDBLite consensus disorder prediction 387 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01362 Cca-Chr11 35213341 35216297 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01362 24 756 Receptor kinase-like Gene Family AT4G37250 59.499 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca11g01362 Pkinase 4.8e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01362 - - gmx:100784503 1181.01