Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01354 ATGGAACCATCGGAGAATTGCTCTGTCAAAGTCGCTCTTCACATTCGTCCTCTCATTGCCGATGAACGACAACAAGGTTGCGTTGAATGCGTTTCCGTCACGCATGGGAAGCCTCAGGTTCAAATTGGGTCACATTCCTTTACATTTGATTATGTTTATGGAAATGGTGGATCTCCTTCTGTTGACATGTTTAAGGAATGCGTTGCTCCATTGGTTGATGGTTTATTCCAAGGTTACAATGCTACAGTACTTGCTTATGGTCAGACAGGATCCGGGAAAACGTATACCATGGGAACTGGCTACAATGACAATTGTCGGACTGGATTAATTCCTCAGGTTATGAATGCCTTGTTCAACAAGATTGAAACACTAAAGAATCAAACAGAATTTCAGTTGCGTGTCTCCTTCATTGAGATTTTGAAGGAAGAGGTGAGGGACTTGTTGGATGCAGTATCTATGGGCAAATCAGAAACCTCTAACTCTAACGGCCATTCTGGAAAAGTAACTATTCCTGGGAAGTCACCAATAACAATTCGTGAAACATCAAATGGAGTAATCACACTGGCAGGAACAACTGAAGTTGCTGTAAGTACATTACAGGAGATGTCTGGTTACTTGGAGCAGGGTTCTTTAAACAGGGCAACAGGAAGTACAAATATGAACAACCAATCCAGTCGGTCACATGCCATTTTCACAATTACATTAGAACAGATGCACAAACTCCATTCTGTTTCTCCAACCAATGAATCTTCAGACGAGGATATGGGTGAAGAATACCTTTCAGCAAAGCTCCATTTGGTAGATCTAGCTGGATCCGAACGAGCTAAAAGAACAGGTTCTGATGGTCTGCGTTTGAAAGAAGGCATTCACATCAATAAAGGTCTTCTTGCTCTTGGTAATGTCATAAGTGCGCTGGGGGATGAGAAAAAGCGAAAGGAGGGTGTGCATGTTCCTTATCGGGATAGCAAACTCACTCGACTCTTACAGGATTCACTTGGTGGAAACAGCAAAACTGTGATGATAGCTTGCATAAGTCCTGCTGATGTCAATGCTGAGGAATCTCTCAATACTCTCAAGTATGCAAATCGTGCTCGCAATATTCAAAATAAGCCTGTTGTTAATCGAGATCTAATATCCAATGAGATGCAGCAAATGCGCCAGCAGTTGAAGTACTTGCAGGCTGAACTTTGTTCTCGTGGAGGAGCCCCTGCTGATGAAATGCGGGTTCTTAAGGAAAGAATTGCTTGGCTTGAGGCAACTAACGAGGATCTCTACAGAGAACTTCATGAATATCGCAGTAGATGTGCTTTTGTAGAGAGATGTGAAGTTGATGAATCAGACGGACCCATTTATCTCATGAAAACTGATGGGCTTGAGAGGTGCATTCAGAGCTTAGATTCATCTGATCATCCCATGGTTGGAAGTATATCAGGTGAGGATTCTAGAGAAACTGATGAAGCAGCAAAAGAGTTGGAGCATGTACTATTACAAAATACCTTGGATAAAGAGATGAATGAGTTGAATAAGCGCTTGGAGCAGAAAGAGTCTGAGATGAAGCTCATTGGAGTTGATGCTGAAGCACTCAAACAGCACTTCGGGAAGAAAATTATGGAACTTGAGGAGGAGAAAAGAAAAGTGCAGGAAGAGAGGGACCGTTTATTGCACGAGGTAGAGAGTCTTGCTACTAATTCAGATGGACTAGCACACAAAACTCATGATGTTCGTGGCCAAAAGTTGAAAGCATTGGAAGCACAGATTTTAGACCTCAAGAAAAAACAAGAAAGCCACGTGCAGCTATTAAAGCAAAAGGAGAAGAGTGAAGAAGCTGCAAAAAGACTGCAGGCTGAGATACAGTATATCAAGGCTCAGAAGGTTCAGTTGCAGCATAAAATGAAGCAAGAGGCAGAACAATTTCGACAATGGAAGGCTTCTCGTGAGAAGGAGCTACTCCAGTTGAAAAAGGAGGGAAGAAAGAATGAGTACCAAAGACATAAGCTTGAGGCTCTAAACCAGCGGCAAAAAATGGTTCTTCAAAGGAAGACAGAGGAAGCAACAATGGCTACAAAAAGGCTAAAGGAATTGTTGGAAGCCCGCAAATCTTCTCCCCGTGATAACTCTGTTTATTCAAATGGACATCTACAGCCCGGGCTGGTTAATGAAAAATCCCTCCAAAGGTGGCTTGATCAGGAATTGGAGGTCATGGTACATGTGCATGAAGTTCGTGCTGAATATGACAAACAAAATCAAGTCCTAGCTGCCCTGGAAGAAGAGTTGGCTTTACTAAAACAGGATCAGTTTTCAGATGGGCAGAGTATTCACACGGGAAAAAGCAGATATTTGAGGCTGTTATCCATGTCACCAGATGCAAAAGTTGAGAGAATAGCTTCTCTTGAGAACATGCTGTGCATGTCTTCAGTTGCTATGAAAGCCATGGCATCACAACTTACTGAGGCAGAAGAAAGGGAACGATCATTGAATAACCGTGGTCGTTGGAACCAGCTACGCTCAATGGGAGATGCAAAGAATGTGCTTCAGTATTTGTTCAATGCTACTGCAGATGCAAGGTGCCAATTATGGGAAAAGAATATGGAACTTAAGGATTTGAAAGAGCAACTAAATGAGCTTGTAGCACTACTACAACAAAGTGAAGCACAGATTAAAGAACATGTAAAGGAGCAAAAAATAAGAGAACAAGCCATTGTCACCTCATTGAATACACCATCATTGGAAAACTCACGGTCCTTGAAACACCTTGCGGATGAAATGAGTGGTCCATTGTCTCCAATGTCACTTCCTGCTCCGAAGCAACTCAAATTCACCCCTGGAGTTGTTAATTGGTCAACCAAGGAGTCAGCTACATTTTTAGATGAAGCACGAAAGATGGTACCCATTGGAGAGTTGTCAACAAAGAGGCTAGCAGCTATAGGACAAGCCGGAAAACTTTGGAAGTGGAGGAGAAGTCATCATCAATGGCTGCTACAGTTTAAATGGAAGTGGCAGAAGCCCTGGAAACTCTCAGAATGGATCAAACACAGTGATGAGACAATTATGAGGTCAAGGCCTCGAGCACAAGCTTtgattaatgcgatgtga 3093 0.4239 MEPSENCSVKVALHIRPLIADERQQGCVECVSVTHGKPQVQIGSHSFTFDYVYGNGGSPSVDMFKECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGYNDNCRTGLIPQVMNALFNKIETLKNQTEFQLRVSFIEILKEEVRDLLDAVSMGKSETSNSNGHSGKVTIPGKSPITIRETSNGVITLAGTTEVAVSTLQEMSGYLEQGSLNRATGSTNMNNQSSRSHAIFTITLEQMHKLHSVSPTNESSDEDMGEEYLSAKLHLVDLAGSERAKRTGSDGLRLKEGIHINKGLLALGNVISALGDEKKRKEGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADVNAEESLNTLKYANRARNIQNKPVVNRDLISNEMQQMRQQLKYLQAELCSRGGAPADEMRVLKERIAWLEATNEDLYRELHEYRSRCAFVERCEVDESDGPIYLMKTDGLERCIQSLDSSDHPMVGSISGEDSRETDEAAKELEHVLLQNTLDKEMNELNKRLEQKESEMKLIGVDAEALKQHFGKKIMELEEEKRKVQEERDRLLHEVESLATNSDGLAHKTHDVRGQKLKALEAQILDLKKKQESHVQLLKQKEKSEEAAKRLQAEIQYIKAQKVQLQHKMKQEAEQFRQWKASREKELLQLKKEGRKNEYQRHKLEALNQRQKMVLQRKTEEATMATKRLKELLEARKSSPRDNSVYSNGHLQPGLVNEKSLQRWLDQELEVMVHVHEVRAEYDKQNQVLAALEEELALLKQDQFSDGQSIHTGKSRYLRLLSMSPDAKVERIASLENMLCMSSVAMKAMASQLTEAEERERSLNNRGRWNQLRSMGDAKNVLQYLFNATADARCQLWEKNMELKDLKEQLNELVALLQQSEAQIKEHVKEQKIREQAIVTSLNTPSLENSRSLKHLADEMSGPLSPMSLPAPKQLKFTPGVVNWSTKESATFLDEARKMVPIGELSTKRLAAIGQAGKLWKWRRSHHQWLLQFKWKWQKPWKLSEWIKHSDETIMRSRPRAQALINAM 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01354 1030 PANTHER KINESIN-LIKE PROTEIN KIN-4B 1 1029 - -
Cca11g01354 1030 Coils Coil 375 395 - -
Cca11g01354 1030 ProSiteProfiles Kinesin motor domain profile. 8 367 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca11g01354 1030 CDD KISc_KIF4 7 368 - -
Cca11g01354 1030 Coils Coil 677 697 - -
Cca11g01354 1030 PRINTS Kinesin heavy chain signature 78 99 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca11g01354 1030 PRINTS Kinesin heavy chain signature 218 235 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca11g01354 1030 PRINTS Kinesin heavy chain signature 263 281 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca11g01354 1030 PRINTS Kinesin heavy chain signature 317 338 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca11g01354 1030 Coils Coil 808 828 - -
Cca11g01354 1030 Coils Coil 579 630 - -
Cca11g01354 1030 SMART kinesin_4 6 375 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca11g01354 1030 Gene3D Kinesin motor domain 1 395 IPR036961 -
Cca11g01354 1030 Coils Coil 858 892 - -
Cca11g01354 1030 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 1 1029 - -
Cca11g01354 1030 Coils Coil 497 524 - -
Cca11g01354 1030 MobiDBLite consensus disorder prediction 155 174 - -
Cca11g01354 1030 ProSitePatterns Kinesin motor domain signature. 262 273 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cca11g01354 1030 Pfam Kinesin motor domain 15 367 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca11g01354 1030 Coils Coil 737 764 - -
Cca11g01354 1030 Coils Coil 529 563 - -
Cca11g01354 1030 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 398 IPR027417 -
Cca11g01354 1030 Coils Coil 407 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01354 Cca-Chr11 35055991 35067346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01354 9 400 Calmodulin-binding Proteins AT5G65930 34.343 8.76e-54 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01354 - - gsj:114393858 1860.5