Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01351 ATgaaaggagaaggaggaagcacgaagaagagaggaaaaaAAGGTGAGAATCGTTACAAAGGAATTAGAATGAGGAAGTGGGGCAAGTGGGTCGCTGAGATTCGTGAACCTAACAAGCGTTCTCGAATTTGGCTCGGTTCCTATTCCACACCCGTTGCGGCGGCGCGTGCTTATGACACTGCTGTCTTCTACCTCCGGGGTCCCTCCGCCTGCCTTAACTTCCCCGACCTCCTCGCTGTGGAAGGCCCCACCGCCGACATGTCCGCCGCTTCCATCAGGAAGAAGGCCACCGAGGTCGGTGCCAGAGTCGACGCTCTCCACCTCCAGAACGCGCCCGCTGTCGTCGCCGGAGAATTCATCGACCGGGTCGACCTCAATAAGATACCTGAACCCGAAAATTTGGATTTTGACTGGGCCGGTTGCTAA 426 0.5188 MKGEGGSTKKRGKKGENRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSACLNFPDLLAVEGPTADMSAASIRKKATEVGARVDALHLQNAPAVVAGEFIDRVDLNKIPEPENLDFDWAGC 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01351 141 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Cca11g01351 141 PRINTS Ethylene responsive element binding protein signature 57 77 IPR001471 GO:0003700|GO:0006355
Cca11g01351 141 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Cca11g01351 141 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Cca11g01351 141 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 7 135 - -
Cca11g01351 141 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 7 135 - -
Cca11g01351 141 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Cca11g01351 141 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Cca11g01351 141 Gene3D AP2/ERF domain 17 76 IPR036955 GO:0003700|GO:0006355
Cca11g01351 141 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01351 Cca-Chr11 34990361 34991195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01351 14 140 AP2-EREBP Transcription Factor Family AT3G50260 65.217 8.96e-55 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca11g01351 AP2 4.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01351 K09286 - gmx:100784157 226.868
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01481 06 29748956 29749985 Cca11g01351 11 34990361 34991195 PCT