Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01348 ATGTGGGATCTCAATGACTCACCCGATCAGAGGAAGCTCGACGAGGAATCCGAAGGCTGTTCCTCCCTCAAGACTTCCATCGACGGGGACGATGATAACAACAACAAAGGCAAAAGGGTTGGATCTGTTTCCAATTCCAGCTCTTCCGCGGTGGTCATCGAGGACGGATCagaagaagaggaagaggacgacgaagaagaaCAtggtggtggtgctggtggtggtggAAGAAGAACAACCATGAAGAAACGAAGCAGCAAGATTTTCGGCTTTTCTGTCACCCCAGATGAAGACTCCATGGACAGTGACCTCCCACCTGTCACCAGGCAATTTTTTCCGGTCGACGATGCTGACGTGGCGGTTGCATCCGGCGCTGCTACCGGAAGCTCCACGTTCCCTCGTGCTCACTGGGTCGGTGTCAAATTTTGCCAATCGGAAACACTCGGTGCTGGAAAATCAGTCGAAGTTTCTCAGCCTATGAAGAAGAGTCGCCGAGGACCAAGGTCGAGGAGTTCTCAGTATAGAGGAGTCACCTTTTACCGAAGAACGGGTCGGTGGGAGTCTCATATATGGGATTGCGGAAAGCAAGTGTATCTAGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCGTATGATAGAGCGGCCATTAAGTTCCGAGGAGTGGAGGCCGACATAAACTTCAACATTGAAGATTATGAAGACGACTTGAAGCAGATGAGCAATCTGACCAAGGAAGAGTTTGTACACGTGCTACGCCGACAAAGCACTGGATTTCCGAGAGGGAGCTCCAAATATAGAGGTGTAACTTTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTTTAGGGAAAAAGTACGTTTATTTGGGTCTCTTTGACACCGAAATTGAAGCTGCAAGGGCTTATGACAAAGCAGCCATAAAATGCAACGGCAAAGAGGCTGTCACCAATTTTGATCCCAGCATCTACGAGAACGAGCTTAATTCCGAATCCACAGGTAACGCTGCAGCAGATCACAATCTGGATTTAAGTTTGGGCAATTCAAGTTCAAAGCCTAGCAATAATCAAGCATTGGGGAATCACGCCTCAAATGCTGCAACTGCAACCCATGATCAGCACCTGCCATCTGAATCTAATTGGCGGAATGGGGGAAGCAAGCCTAAGCTGGTGAATATACTCCCAAAACCATGTCACAGAAGCAACAATAAGGACGCACATGGAAGGGATGTGCACGGGGAGAGTGAAGCATTGCGCATGCTAAGTCAAACCCACCTTCATTCTCCAGCCTCCAATGAAATGCAAAGATATGGTCCCTACAGGTCTCCTGGAGGAGAGTCTCAAATGCTTCAAAATTTTGCTCATATTCACCCACCAAATTTTCATTTTCCTAGCAGCAGCATTGGAGGCCGTATTGGAAGTGATCTTTCATTATCACTGGCCGATCAACAACAGTGGCAATCCGGGCCTCCACATTATCTAGCAACTGCTGCAGCATCATCAGGATTCCCACAACAGATAAGACCCTCTTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACACTCTCATGAGACCCTCATGA 1590 0.4673 MWDLNDSPDQRKLDEESEGCSSLKTSIDGDDDNNNKGKRVGSVSNSSSSAVVIEDGSEEEEEDDEEEHGGGAGGGGRRTTMKKRSSKIFGFSVTPDEDSMDSDLPPVTRQFFPVDDADVAVASGAATGSSTFPRAHWVGVKFCQSETLGAGKSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSESTGNAAADHNLDLSLGNSSSKPSNNQALGNHASNAATATHDQHLPSESNWRNGGSKPKLVNILPKPCHRSNNKDAHGRDVHGESEALRMLSQTHLHSPASNEMQRYGPYRSPGGESQMLQNFAHIHPPNFHFPSSSIGGRIGSDLSLSLADQQQWQSGPPHYLATAAASSGFPQQIRPSSQGWLQKNGFHTLMRPS 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01348 529 MobiDBLite consensus disorder prediction 38 53 - -
Cca11g01348 529 MobiDBLite consensus disorder prediction 153 172 - -
Cca11g01348 529 PRINTS Ethylene responsive element binding protein signature 266 277 IPR001471 GO:0003700|GO:0006355
Cca11g01348 529 PRINTS Ethylene responsive element binding protein signature 304 324 IPR001471 GO:0003700|GO:0006355
Cca11g01348 529 Gene3D AP2/ERF domain 172 231 IPR036955 GO:0003700|GO:0006355
Cca11g01348 529 Gene3D AP2/ERF domain 264 323 IPR036955 GO:0003700|GO:0006355
Cca11g01348 529 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 527 - -
Cca11g01348 529 ProSiteProfiles AP2/ERF domain profile. 173 229 IPR001471 GO:0003700|GO:0006355
Cca11g01348 529 Pfam AP2 domain 264 313 IPR001471 GO:0003700|GO:0006355
Cca11g01348 529 Pfam AP2 domain 173 221 IPR001471 GO:0003700|GO:0006355
Cca11g01348 529 SUPERFAMILY DNA-binding domain 172 230 IPR016177 GO:0003677
Cca11g01348 529 SUPERFAMILY DNA-binding domain 264 324 IPR016177 GO:0003677
Cca11g01348 529 CDD AP2 264 324 IPR001471 GO:0003700|GO:0006355
Cca11g01348 529 MobiDBLite consensus disorder prediction 1 83 - -
Cca11g01348 529 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 527 - -
Cca11g01348 529 MobiDBLite consensus disorder prediction 332 388 - -
Cca11g01348 529 MobiDBLite consensus disorder prediction 1 21 - -
Cca11g01348 529 ProSiteProfiles AP2/ERF domain profile. 265 322 IPR001471 GO:0003700|GO:0006355
Cca11g01348 529 SMART rav1_2 265 328 IPR001471 GO:0003700|GO:0006355
Cca11g01348 529 SMART rav1_2 173 235 IPR001471 GO:0003700|GO:0006355
Cca11g01348 529 MobiDBLite consensus disorder prediction 332 412 - -
Cca11g01348 529 MobiDBLite consensus disorder prediction 54 68 - -
Cca11g01348 529 CDD AP2 173 230 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01348 Cca-Chr11 34785324 34789814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01348 1 361 AP2-EREBP Transcription Factor Family AT4G36920 66.043 3.45e-137 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Cca11g01348 AP2 3.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01348 K09284 - gmx:100792442 857.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01479 06 29718218 29721365 Cca11g01348 11 34785324 34789814 PCT