Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01336 ATGAATCCTCAAGGTGGCGGAGCTGGACAAGTTAATGCAAGCAACACAAACAACCAAAATTTCACCTCTCATCCATCTCTTGAATCATTGCAGACGACGCTCCTTCCTTTGTTTCCTCTCACCACTGAAAGTGAGCAAAGGTTCCTTGAAGGGCTTCCTATGCCAAATCTGAATCTCCCTCAACAAGGTCTCACTGGTGTTCCTCTTCATGAATCCCTTAACTTATCATTGGGATCCAACGTTTCTTCTTCAAGTTCCATTGCTATAACTCCTCAAAATCCATCCACCAATCTTGACTTGTCACTATCACTAACAATAGGCTTAGCTCATCAGGGAAATGAAGTGCAAGTGCAAGGTGTGCATGGAGGCACCTCATCAGACACTGTTCTCTTACCAAGTAAGAGAAACCATGCTTCTGGAGGATTTCTCAGAGGCGAAAGTTCAAACATGGGAGAACAAGCTCCACCGGCCAAACGACATGTCACTGAGTTTCAGGTCGGTGCCAACAACAATTTGAACCCATCACCACCACTTCCTGAGAGGCAAGTAGCACAACCCTTCAGTGAAACTCCACGCACTGAACCCATCCAAGGTCATGTTCATGTCAACCCACATAATGGATCAGCTCCTGCACCACAACCACAACCACAACGTTATTCGCGTGTTAACAGGATTGCAAACAACTTCCGAAGAGGTGTACAGGGTCAACTACACCATTGTTTGTCCTGTAGCGGATCCTCACACCATAGTTTTCATAGATCATCCATGACTGGTCCTCCTTCGATCAACAATGGGAGTGCAAGAAACACTCCTCGGGTGATTGCACCCCCTTATCCTCAAACCCTAGGTGATAATATGGCCCCTTTACATGGTCACATAAACTTTCAGAGAGGTAACATGTTTGGCCATAATGCTCATCAAGCAATTATGTACCACCCTCCGAGTGACCAAGCTGGTCCTTTAGCTTTGGCTTCTTCACAAGGCATACGAGAAATGAGCCTTACTGTTGCAGCAAGTAGTTCCAGAAATCAGAATAATTACCAAAATCAAGCTGTAGTGCCTTCACCTCAACCTCGTGTCAGTCATGAGACTTTTTTGCCACAACAGTTTTCTACTGTTGACATGAGAAGAAGGCTTCCAGCTGAGGTTCAATCTATCCTGAATCAAGTACGCGTGGGTCGACGCACTCTAATGTTCGAGGATCTGATGGTCTTTGACTATTCACTTGTGTTACTAGAGTATGAGACGGAACTCCAAAATCAATTGGATCCATCACACCCGGGACTGAGTGCGGAAGAGATCATGGGCCACATTAGGCGTGAAAGTTTCACGTCATCCGTTGGTACAGAAAATCAAGAAGATGAAGAAAAATGTGCCATCTGTCTGGAGGTTTATGAAGATGGAGACGAAATTGGGAAGTTGGATTTATGTATTCACATATTTCACGTTCAATGCATCAAACAATGGCTCATGCAGCGGAACGTATGCCCGATCTGCAAAAGAATTGGGTTGACAATAAACGATGCAGAAAATGAAAGTGGAGCAGTAGTTAATAATGAAAATGCCAATGCTTAA 1575 0.4457 MNPQGGGAGQVNASNTNNQNFTSHPSLESLQTTLLPLFPLTTESEQRFLEGLPMPNLNLPQQGLTGVPLHESLNLSLGSNVSSSSSIAITPQNPSTNLDLSLSLTIGLAHQGNEVQVQGVHGGTSSDTVLLPSKRNHASGGFLRGESSNMGEQAPPAKRHVTEFQVGANNNLNPSPPLPERQVAQPFSETPRTEPIQGHVHVNPHNGSAPAPQPQPQRYSRVNRIANNFRRGVQGQLHHCLSCSGSSHHSFHRSSMTGPPSINNGSARNTPRVIAPPYPQTLGDNMAPLHGHINFQRGNMFGHNAHQAIMYHPPSDQAGPLALASSQGIREMSLTVAASSSRNQNNYQNQAVVPSPQPRVSHETFLPQQFSTVDMRRRLPAEVQSILNQVRVGRRTLMFEDLMVFDYSLVLLEYETELQNQLDPSHPGLSAEEIMGHIRRESFTSSVGTENQEDEEKCAICLEVYEDGDEIGKLDLCIHIFHVQCIKQWLMQRNVCPICKRIGLTINDAENESGAVVNNENANA 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01336 524 MobiDBLite consensus disorder prediction 1 24 - -
Cca11g01336 524 ProSiteProfiles Zinc finger RING-type profile. 458 500 IPR001841 -
Cca11g01336 524 SMART ring_2 458 499 IPR001841 -
Cca11g01336 524 CDD RING-H2_PA-TM-RING 458 500 - -
Cca11g01336 524 SUPERFAMILY RING/U-box 450 503 - -
Cca11g01336 524 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 70 504 IPR045191 GO:0061630
Cca11g01336 524 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 418 503 IPR013083 -
Cca11g01336 524 MobiDBLite consensus disorder prediction 169 217 - -
Cca11g01336 524 Pfam Ring finger domain 457 500 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01336 Cca-Chr11 34546978 34553864 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01336 376 504 C3H Transcription Factor Family AT2G15530 33.775 4.33e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01336 - K10635 vra:111241966 174.866